Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000501.1-P | Field mustard | extracellular | 98.25 | 98.25 |
| CDX83277 | Canola | extracellular | 97.37 | 97.37 |
| CDY30535 | Canola | extracellular | 91.23 | 92.04 |
| CDX77131 | Canola | extracellular | 90.35 | 91.15 |
| AT2G27710.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 88.6 | 87.83 |
| CDX71430 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 86.84 | 86.84 |
| CDY04508 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 83.33 | 84.07 |
| AT2G27720.2 | Thale cress | extracellular | 88.6 | 77.69 |
| KRH26594 | Soybean | endoplasmic reticulum | 65.79 | 67.57 |
| HORVU1Hr1G073640.1 | Barley | cytosol | 56.14 | 56.64 |
| TraesCS1A01G277500.1 | Wheat | nucleus | 56.14 | 56.64 |
| TraesCS1D01G276700.1 | Wheat | extracellular | 55.26 | 56.25 |
| TraesCS1B01G286500.1 | Wheat | extracellular | 54.39 | 55.36 |
| CDY04023 | Canola | cytosol | 53.51 | 53.98 |
| CDY47246 | Canola | extracellular | 53.51 | 53.51 |
| KRH22710 | Soybean | endoplasmic reticulum | 67.54 | 51.68 |
| CDY00130 | Canola | cytosol | 50.88 | 51.33 |
| CDX86428 | Canola | cytosol | 50.0 | 50.44 |
| CDX85202 | Canola | extracellular | 50.0 | 50.44 |
| Os05t0445500-01 | Rice | nucleus | 60.53 | 49.64 |
| KXG22113 | Sorghum | endoplasmic reticulum, extracellular, plastid | 57.89 | 45.52 |
| Zm00001d010128_P003 | Maize | cytosol | 55.26 | 38.18 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | GO:A0A078H2W0 | UniProt:A0A078H2W0 | EnsemblPlants:CDY31188 | ProteinID:CDY31188 |
| ProteinID:CDY31188.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00047299001 |
| InterPro:IPR038716 | HAMAP:MF_01478 | InterPro:P1/P2_N_sf | PFAM:PF00428 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF72 |
| InterPro:Ribosomal_L12 | SignalP:SignalP-noTM | UniParc:UPI0000E647B0 | SEG:seg | : | : |
Description
BnaC03g47030DBnaC03g47030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2W0]
Coordinates
chrLK032268:+:232498..233606
Molecular Weight (calculated)
11525.7 Da
IEP (calculated)
4.214
GRAVY (calculated)
-0.106
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVVAAFLLA VLSGKASPTS ADIKDILGSV GAETEDAQIE LLLKEVKGKD CAELIALGRE KLASVPCGGG GVAMASAPSA GGGGGAAPAE EAKKEEKKEE
101: KEESDDDMGF SLFE
101: KEESDDDMGF SLFE
001: MKVVAAFLLA VLSGKASPTT GDIKDILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG GGVAVASATS GGGGGGGAPA AESKKEEKKE
101: EKEESDDDMG FSLFE
101: EKEESDDDMG FSLFE
Arabidopsis Description
60S acidic ribosomal protein family [Source:UniProtKB/TrEMBL;Acc:F4IGR4]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.