CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034363.1-P	Field mustard	extracellular	100.0	100.0
CDX77131	Canola	extracellular	99.11	99.11
CDX83277	Canola	extracellular	92.04	91.23
CDY31188	Canola	extracellular	92.04	91.23
CDX71430	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.5	87.72
AT2G27710.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.61	86.09
CDY04508	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.96	84.96
AT2G27720.2	Thale cress	extracellular	86.73	75.38
KRH26594	Soybean	endoplasmic reticulum	62.83	63.96
HORVU1Hr1G073640.1	Barley	cytosol	54.87	54.87
TraesCS1A01G277500.1	Wheat	nucleus	54.87	54.87
TraesCS1D01G276700.1	Wheat	extracellular	53.98	54.46
TraesCS1B01G286500.1	Wheat	extracellular	53.1	53.57
CDY04023	Canola	cytosol	53.1	53.1
CDY47246	Canola	extracellular	53.1	52.63
CDX86428	Canola	cytosol	50.44	50.44
CDX85202	Canola	extracellular	50.44	50.44
CDY00130	Canola	cytosol	49.56	49.56
KRH22710	Soybean	endoplasmic reticulum	64.6	48.99
Os05t0445500-01	Rice	nucleus	60.18	48.92
KXG22113	Sorghum	endoplasmic reticulum, extracellular, plastid	55.75	43.45
Zm00001d010128_P003	Maize	cytosol	53.1	36.36

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	GO:A0A078GVP7	UniProt:A0A078GVP7	EnsemblPlants:CDY30535	ProteinID:CDY30535
ProteinID:CDY30535.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00045256001
InterPro:IPR038716	HAMAP:MF_01478	InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF72
InterPro:Ribosomal_L12	SignalP:SignalP-noTM	UniParc:UPI0002543A7A	SEG:seg	:	:

Description

BnaA04g15980DBnaA04g15980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVP7]

Coordinates

chrLK032254:-:277288..278450

Molecular Weight (calculated)

11453.6 Da

IEP (calculated)

4.236

GRAVY (calculated)

-0.030

Length

113 amino acids

Sequence
(BLAST)

001: MKVVAAFLLA VLSGKACPTS ADIKVILNSV GCETEDSQIE LLLKEVNGKD VAELIAVGRE KLASVPSGGG GVAMASAPSA GGGGGAAPAE AKKEEKKEEK
101: EESDDDMGFS LFE

Best Arabidopsis Sequence Match ( AT2G27710.4 )
(BLAST)

1: MKVVAAYLLA VLSGKASPTS ADIKTILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG ASAAESKKEE KKEEKEESDD DMGFSLFE

Arabidopsis Description

RPP2BAT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.