Factsheet for HORVU1Hr1G073640.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G039610.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44590.1	HORVU7Hr1G039610.2	AT1G10510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G277500.1	Wheat	nucleus	92.04	92.04
TraesCS1B01G286500.1	Wheat	extracellular	89.38	90.18
TraesCS1D01G276700.1	Wheat	extracellular	88.5	89.29
Os05t0445500-01	Rice	nucleus	82.3	66.91
KXG22113	Sorghum	endoplasmic reticulum, extracellular, plastid	82.3	64.14
KRH26594	Soybean	endoplasmic reticulum	61.95	63.06
AT2G27710.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.29	58.26
AT3G44590.1	Thale cress	extracellular	56.64	57.66
CDY04508	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.52	57.52
CDX83277	Canola	extracellular	57.52	57.02
Bra000501.1-P	Field mustard	extracellular	57.52	57.02
Bra012004.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.64	56.64
CDY31188	Canola	extracellular	56.64	56.14
CDX77131	Canola	extracellular	54.87	54.87
CDY30535	Canola	extracellular	54.87	54.87
Bra034363.1-P	Field mustard	extracellular	54.87	54.87
CDX71430	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.87	54.39
Zm00001d010128_P003	Maize	cytosol	76.11	52.12
AT2G27720.2	Thale cress	extracellular	59.29	51.54
KRH22710	Soybean	endoplasmic reticulum	61.95	46.98
HORVU0Hr1G004480.1	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.17	36.84
HORVU7Hr1G091910.1	Barley	plastid	48.67	27.23

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:HORVU1Hr1G073640	EnsemblPlants:HORVU1Hr1G073640.1	InterPro:IPR038716	UniProt:M0V315	HAMAP:MF_01478	InterPro:P1/P2_N_sf
PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF76	InterPro:Ribosomal_L12	UniParc:UPI0002957C48	SEG:seg

Description

No Description!

Coordinates

chrchr1H:+:504078029..504080009

Molecular Weight (calculated)

11504.6 Da

IEP (calculated)

4.178

GRAVY (calculated)

-0.076

Length

113 amino acids

Sequence
(BLAST)

001: MKMIAAYLLA YLGGNSSPTA GDIKNILESV GAEADEEKLK FLLAELKGKD ITEVIAAGRE KFAAVPSGGG AIAVGAPAAA AGGAAAPAAE SKKEEKVEEK
101: EESDDDMGFS LFD

Best Arabidopsis Sequence Match ( AT2G27710.4 )
(BLAST)

1: MKVVAAYLLA VLSGKASPTS ADIKTILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG ASAAESKKEE KKEEKEESDD DMGFSLFE

Arabidopsis Description

RPP2BAT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.