Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04508 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 99.11 | 99.11 |
| AT2G27710.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 86.73 | 85.22 |
| Bra034363.1-P | Field mustard | extracellular | 84.07 | 84.07 |
| Bra000501.1-P | Field mustard | extracellular | 84.07 | 83.33 |
| AT2G27720.2 | Thale cress | extracellular | 84.07 | 73.08 |
| KRH26594 | Soybean | endoplasmic reticulum | 63.72 | 64.86 |
| HORVU1Hr1G073640.1 | Barley | cytosol | 56.64 | 56.64 |
| TraesCS1A01G277500.1 | Wheat | nucleus | 55.75 | 55.75 |
| TraesCS1D01G276700.1 | Wheat | extracellular | 54.87 | 55.36 |
| TraesCS1B01G286500.1 | Wheat | extracellular | 53.98 | 54.46 |
| Bra039054.1-P | Field mustard | cytosol | 50.44 | 50.44 |
| Os05t0445500-01 | Rice | nucleus | 61.06 | 49.64 |
| Bra025339.1-P | Field mustard | cytosol | 48.67 | 48.67 |
| KRH22710 | Soybean | endoplasmic reticulum | 63.72 | 48.32 |
| Bra033049.1-P | Field mustard | cytosol | 48.67 | 48.25 |
| KXG22113 | Sorghum | endoplasmic reticulum, extracellular, plastid | 55.75 | 43.45 |
| Zm00001d010128_P003 | Maize | cytosol | 53.98 | 36.97 |
Protein Annotations
| Gene3D:1.10.10.1410 | MapMan:17.1.2.1.47 | EnsemblPlantsGene:Bra012004 | EnsemblPlants:Bra012004.1 | EnsemblPlants:Bra012004.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR038716 | UniProt:M4D695 | HAMAP:MF_01478 |
| InterPro:P1/P2_N_sf | PFAM:PF00428 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF72 | InterPro:Ribosomal_L12 | UniParc:UPI0002541932 |
| SEG:seg | : | : | : | : | : |
Description
AT2G27710 (E=2e-025) | 60S acidic ribosomal protein P2 (RPP2B)
Coordinates
chrA07:+:10661220..10661869
Molecular Weight (calculated)
11286.4 Da
IEP (calculated)
4.281
GRAVY (calculated)
-0.083
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVVAAYLLA ALSGKASPTS ADIKQILGSV GCESEDSQIE LLLKEVSGKD LCDLIAAGRE KLASVPSGGG GVAMAAAPSA GGGGGAPAAA AKKEEKKEEK
101: EESDDDMGFS LFE
101: EESDDDMGFS LFE
1: MKVVAAYLLA VLSGKASPTS ADIKTILGSV GAETEDSQIE LLLKEVKGKD LAELIAAGRE KLASVPSGGG ASAAESKKEE KKEEKEESDD DMGFSLFE
Arabidopsis Description
RPP2BAT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.