Factsheet for TraesCS1A01G277500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 28628250

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G194400.1
TraesCS7B01G100000.1
TraesCS7D01G196000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44590.1	TraesCS7A01G194400.1	AT1G10510.1	21798944
AT3G44590.1	TraesCS7B01G100000.1	AT1G10510.1	21798944
AT3G44590.1	TraesCS7D01G196000.1	AT1G10510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G286500.1	Wheat	extracellular	97.35	98.21
TraesCS1D01G276700.1	Wheat	extracellular	96.46	97.32
HORVU1Hr1G073640.1	Barley	cytosol	92.04	92.04
TraesCS2A01G294000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.22	75.22
Os05t0445500-01	Rice	nucleus	80.53	65.47
KRH26594	Soybean	endoplasmic reticulum	62.83	63.96
KXG22113	Sorghum	endoplasmic reticulum, extracellular, plastid	81.42	63.45
AT3G44590.1	Thale cress	extracellular	58.41	59.46
AT2G27710.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	58.41	57.39
CDX83277	Canola	extracellular	57.52	57.02
Bra000501.1-P	Field mustard	extracellular	57.52	57.02
CDY04508	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.64	56.64
CDY31188	Canola	extracellular	56.64	56.14
Bra012004.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.75	55.75
CDY30535	Canola	extracellular	54.87	54.87
CDX77131	Canola	extracellular	54.87	54.87
Bra034363.1-P	Field mustard	extracellular	54.87	54.87
CDX71430	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.87	54.39
Zm00001d010128_P003	Maize	cytosol	75.22	51.52
AT2G27720.2	Thale cress	extracellular	56.64	49.23
KRH22710	Soybean	endoplasmic reticulum	62.83	47.65

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038716
HAMAP:MF_01478	InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF76	InterPro:Ribosomal_L12
EnsemblPlantsGene:TraesCS1A01G277500	EnsemblPlants:TraesCS1A01G277500.1	TIGR:cd05833	SEG:seg	:	:

Description

No Description!

Coordinates

chr1A:+:473010505..473011627

Molecular Weight (calculated)

11505.4 Da

IEP (calculated)

4.057

GRAVY (calculated)

-0.086

Length

113 amino acids

Sequence
(BLAST)

001: MKLIAAYLLA YLGGNSSPSA ADVKNILDSV GAEADEEKLE FLLAELKGKD ITEVIASGRE KFAAVPSGGG AIAVGAPAAA SGGAAAPAAE SKKEEKVEEK
101: EESDEDMGFS LFD

Best Arabidopsis Sequence Match ( AT3G44590.1 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.