Factsheet for Os05t0445500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
YLoc:	extracellular

nucleus: 19621931
nucleus: 26035336
extracellular: 26072143
plasma membrane: 27800704

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0237502-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44590.1	Os06t0237502-00	AT1G10510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G073640.1	Barley	cytosol	66.91	82.3
TraesCS1A01G277500.1	Wheat	nucleus	65.47	80.53
TraesCS1D01G276700.1	Wheat	extracellular	64.03	79.46
TraesCS1B01G286500.1	Wheat	extracellular	63.31	78.57
Os01t0191100-01	Rice	extracellular	57.55	70.18
KXG22113	Sorghum	endoplasmic reticulum, extracellular, plastid	67.63	64.83
KRH26594	Soybean	endoplasmic reticulum	50.36	63.06
CDY04508	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.36	61.95
Bra012004.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.64	61.06
CDY31188	Canola	extracellular	49.64	60.53
AT3G44590.1	Thale cress	extracellular	48.2	60.36
CDY30535	Canola	extracellular	48.92	60.18
Bra034363.1-P	Field mustard	extracellular	48.92	60.18
AT2G27710.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.64	60.0
CDX83277	Canola	extracellular	48.92	59.65
Bra000501.1-P	Field mustard	extracellular	48.92	59.65
CDX77131	Canola	extracellular	48.2	59.29
CDX71430	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.48	57.89
AT2G27720.2	Thale cress	extracellular	48.92	52.31
Zm00001d010128_P003	Maize	cytosol	61.87	52.12
KRH22710	Soybean	endoplasmic reticulum	51.8	48.32
Os08t0250300-00	Rice	cytosol	38.85	47.37
Os07t0251301-00	Rice	cytosol	33.09	41.82
Os07t0470300-00	Rice	cytosol	31.65	40.37

Protein Annotations

Gene3D:1.10.10.1410	MapMan:17.1.2.1.47	UniProt:A0A0P0WMY2	ProteinID:BAS94277.1	GO:GO:0002181	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR038716	HAMAP:MF_01478
EnsemblPlantsGene:Os05g0445500	EnsemblPlants:Os05t0445500-01	InterPro:P1/P2_N_sf	PFAM:PF00428	PANTHER:PTHR21141	PANTHER:PTHR21141:SF76
InterPro:Ribosomal_L12	TMHMM:TMhelix	UniParc:UPI000393C0D1	SEG:seg	:	:

Description

Similar to Acidic ribosomal protein (Fragment). (Os05t0445500-01);Similar to 60S acidic ribosomal protein p2b (Fragment). (Os05t0445500-02)

Coordinates

chr5:+:21835435..21837665

Molecular Weight (calculated)

14428.9 Da

IEP (calculated)

3.925

GRAVY (calculated)

0.014

Length

139 amino acids

Sequence
(BLAST)

001: ERTILPSAAG LASSPFLLFE AFFNFTMKLI AAYLLAVLGG NTSPSADDIK NILESVGVEA NDERLEFLLS ELEGKDITEV IAAGREKFAS VPSGGGGGIA
101: VAAPTAAGGG AAPAEEAKKE EKVEEKEESD DDMGFSLFD

Best Arabidopsis Sequence Match ( AT3G44590.2 )
(BLAST)

001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E

Arabidopsis Description

RPP2DAcidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.