Factsheet for Os06t0237502-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G196000.1	Wheat	plastid	76.22	76.22
TraesCS7A01G194400.1	Wheat	plastid	75.73	75.61
TraesCS7B01G100000.1	Wheat	plastid	75.08	75.2
HORVU7Hr1G039610.2	Barley	cytosol, peroxisome, plastid	76.87	74.57
Zm00001d044774_P004	Maize	plastid	72.15	68.26
KXG19681	Sorghum	plastid	73.13	68.24
VIT_01s0026g00610.t01	Wine grape	mitochondrion	54.56	67.0
GSMUA_Achr9P28160_001	Banana	plastid	60.1	59.81
PGSC0003DMT400040302	Potato	plastid	55.7	56.16
Solyc05g006170.2.1	Tomato	plastid	55.54	55.9
CDY20626	Canola	plastid	53.42	54.94
Bra018435.1-P	Field mustard	plastid	52.61	54.01
AT1G10510.1	Thale cress	plastid	53.09	53.88
CDY55048	Canola	plastid	52.12	53.6
CDX93413	Canola	plastid	51.79	53.27
Bra019926.1-P	Field mustard	plastid	51.79	53.27
KRH69472	Soybean	nucleus	52.44	53.14
CDY20954	Canola	plastid	51.47	52.49
KRH74682	Soybean	plastid	51.79	52.48
Os05t0409200-00	Rice	cytosol	3.42	19.63
Os05t0543200-01	Rice	plasma membrane	15.8	17.83

Protein Annotations

EntrezGene:107275646	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A0P0WV17	ProteinID:BAS96968.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0016787	InterPro:IPR001611	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	EnsemblPlantsGene:Os06g0237502	EnsemblPlants:Os06t0237502-00	PFAM:PF13516	PANTHER:PTHR24114
PANTHER:PTHR24114:SF30	SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI000393C158	RefSeq:XP_015641183.1	SEG:seg

Description

Similar to EMB2004. (Os06t0237502-00)

Coordinates

chr6:-:7148668..7155342

Molecular Weight (calculated)

65737.2 Da

IEP (calculated)

7.657

GRAVY (calculated)

-0.125

Length

614 amino acids

Sequence
(BLAST)

001: MESSLLLKPF VLLPSAPRRR HHHHLSLPTP PHRRLPSSSS SSRHASPASY SFAVTRAARE LFDGSADRPP GGVGRGGARR REYRVEQGEA PPAAAAAAAV
101: RGVSPYVVPA AAVLALSFVI WRVVQNLLPG KTKDQSSGES TPSGIMWSFA AGSNLSTSAS FNAEKESRKN LNKFYKEIRT LKNVNMAGRQ FGDEGLFFLA
201: ESLAYNKSAE EVDFSGNGIT AVGIEAFDGI LQINTALKSL NLSGNAIGDE GAKCLSDILV ENVGIQKLLL NSTNIGDEGA KAISDMLKKN KTIRTLQLSN
301: NTIEYSGFAS IAEALLENNV LRSLFVNGNY GGPLGASSLA KGILGNKTLR ELHLHGNGFG NEGVRALMSA LSAHKGKITV LDIGNNNITS EGSLHVAEFI
401: KRTKSLLWLS LYMNDISDEG AEKVADALKQ NKTISTVDLG GNNIHSKGVS AIAETLKDNS VVTTLELSYN PIGPEGVKAL CDVLKFNGKI QTLKLGWCQI
501: GVSGAEFVAD CLKYNTTLST LDLRANGLGD DGAICLARSF KIINESLTSL DLGFNEIRDD GAFALAQALK ANEDLAVTSL NLANNFFTKF GQVALSEARD
601: HVYEMSEKEI DIFF

Best Arabidopsis Sequence Match ( AT1G10510.1 )
(BLAST)

001: MASSSTSSLN LHSLPKASSG LGQWKSGFRY ELLGSSVSRN RLFVSPVVIH HRSPRLPAIK AAYNSDGGSK RSRVYKESQA ASGFPNAKVQ QIASSVLPLG
101: SFAVVTFVLW KVVGKFMSPK SPKTSAGENN SSTQGVKWSI GAGTNLLQGF AAKVDREAKQ RLNEFAKELR SFRSVDMSGC NFGDEGLFFL AESLGYNQTV
201: EEVSFSANGI TAAGVKAFDG VLQSNIMLKI LNLSGNPIGD EGAKTLCATL MENSSIEILQ LNSTDIGDEG AKEIAELLKR NSTLRIIELN NNMIDYSGFT
301: SLAGALLENN TIRNLHLNGN YGGALGANAL AKGLEGNKSL RELHLHGNSI GDEGTRALMA GLSSHKGKVA LLDLGNNSIS AKGAFYVAEY IKRSKSLVWL
401: NLYMNDIGDE GAEKIADSLK QNRSIATIDL GGNNIHAEGV NAIAQALKDN AIITTLEVGY NPIGPDGAKA LSEILKFHGN VKTLKLGWCQ IAAKGAEHVA
501: DMLRYNNTIS VLDLRANGLR DEGASCLARS LKVVNEALTS VDLGFNEIRD DGAFAIAQAL KANEDVTVTS INLGNNFITK FGQSALTDAR DHVLEMTEKE
601: VEIFF

Arabidopsis Description

emb2004RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93ZV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.