CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
plasma membrane 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74682	Soybean	plastid	96.04	96.04
VIT_01s0026g00610.t01	Wine grape	mitochondrion	65.02	78.8
CDY55048	Canola	plastid	63.7	64.66
CDY20954	Canola	plastid	64.19	64.62
Bra019926.1-P	Field mustard	plastid	63.37	64.32
CDX93413	Canola	plastid	63.37	64.32
CDY20626	Canola	plastid	62.21	63.15
Bra018435.1-P	Field mustard	plastid	62.21	63.04
AT1G10510.1	Thale cress	plastid	62.38	62.48
GSMUA_Achr9P28160_001	Banana	plastid	62.87	61.75
PGSC0003DMT400040302	Potato	plastid	61.39	61.08
Solyc05g006170.2.1	Tomato	plastid	61.39	60.98
Os06t0237502-00	Rice	plastid	53.14	52.44
TraesCS7B01G100000.1	Wheat	plastid	52.97	52.37
TraesCS7A01G194400.1	Wheat	plastid	52.64	51.87
TraesCS7D01G196000.1	Wheat	plastid	52.31	51.63
KXG19681	Sorghum	plastid	54.79	50.46
HORVU7Hr1G039610.2	Barley	cytosol, peroxisome, plastid	52.15	49.92
Zm00001d044774_P004	Maize	plastid	53.3	49.77
KRH71426	Soybean	nucleus	18.15	20.64
KRH32020	Soybean	cytosol	17.99	20.41
KRH35557	Soybean	endoplasmic reticulum, nucleus	17.16	19.51
KRG91256	Soybean	endoplasmic reticulum	16.67	18.98

Protein Annotations

EMBL:ACUP02000716	EnsemblPlants:KRH69472	EnsemblPlantsGene:GLYMA_02G029800	EntrezGene:100784693	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PFAM:PF13516	ProteinID:KRH69472	ProteinID:KRH69472.1	SEG:seg	SMART:SM00368	SUPFAM:SSF52047
UniParc:UPI0002336D2F	UniProt:K7K653	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:2729332..2740269

Molecular Weight (calculated)

65184.0 Da

IEP (calculated)

8.568

GRAVY (calculated)

-0.058

Length

606 amino acids

Sequence
(BLAST)

001: MAFTSTLSIY SHPQVRLLNQ RLQSLPFTAA GVAQFAPLPP LNRRRTCSPR SFVFRVSSSV EGSRARSGGS RRVYRQSQAS APLSSAPVKQ IANVVAPVAA
101: FFALTFVIWK LVEKLLVPTP KQLKSLTVES QSPSQGLKWS FAAGTNLLSQ LGEKIERQSK QKLNEFAREL RSFSSIDMSG RNFGDEGLFF LAESLAFNQT
201: AEEVSFAANG ITAAGLRAFD GVLQSNITLK TLDLSGNLVG DEGAKCLCDI LVNNSSIEKL QLNSADLGDE GAKAIAEMLK KNSSLRVLEL NNNMIEYSGF
301: SSLAGALLEN NSIRNIHLNG NYGGALGANA LAKALESNKS LRELHLHGNS IGDEGIRSLM TGLSSHKGKL TLLDIGNNSL TAKGAFHVAE YIKKSKSLLW
401: LNLYMNDIGD EGAEKIAVAL KENRSISTLD LGGNNIHVDG VNAIAQVLKD NLVITTLELS YNPIGPDGAK ALAEVLKFHG NIKTLKLGWC QIGAKGAEFI
501: ADALKYNTTI SILDLRANGL RDEGAQSLAR SLKVVNEALT SLDLGFNEIR DDGAFAIAQA LKSNDDVAVT SLNIGSNFLT KFGQGALADA RDHVLEMTEK
601: EINIFL

Best Arabidopsis Sequence Match ( AT1G10510.1 )
(BLAST)

001: MASSSTSSLN LHSLPKASSG LGQWKSGFRY ELLGSSVSRN RLFVSPVVIH HRSPRLPAIK AAYNSDGGSK RSRVYKESQA ASGFPNAKVQ QIASSVLPLG
101: SFAVVTFVLW KVVGKFMSPK SPKTSAGENN SSTQGVKWSI GAGTNLLQGF AAKVDREAKQ RLNEFAKELR SFRSVDMSGC NFGDEGLFFL AESLGYNQTV
201: EEVSFSANGI TAAGVKAFDG VLQSNIMLKI LNLSGNPIGD EGAKTLCATL MENSSIEILQ LNSTDIGDEG AKEIAELLKR NSTLRIIELN NNMIDYSGFT
301: SLAGALLENN TIRNLHLNGN YGGALGANAL AKGLEGNKSL RELHLHGNSI GDEGTRALMA GLSSHKGKVA LLDLGNNSIS AKGAFYVAEY IKRSKSLVWL
401: NLYMNDIGDE GAEKIADSLK QNRSIATIDL GGNNIHAEGV NAIAQALKDN AIITTLEVGY NPIGPDGAKA LSEILKFHGN VKTLKLGWCQ IAAKGAEHVA
501: DMLRYNNTIS VLDLRANGLR DEGASCLARS LKVVNEALTS VDLGFNEIRD DGAFAIAQAL KANEDVTVTS INLGNNFITK FGQSALTDAR DHVLEMTEKE
601: VEIFF

Arabidopsis Description

emb2004RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93ZV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.