Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019926.1-P | Field mustard | plastid | 100.0 | 100.0 |
| CDY55048 | Canola | plastid | 96.82 | 96.82 |
| CDY20626 | Canola | plastid | 83.25 | 83.25 |
| AT1G10510.1 | Thale cress | plastid | 80.74 | 79.67 |
| CDY20954 | Canola | plastid | 75.88 | 75.25 |
| VIT_01s0026g00610.t01 | Wine grape | mitochondrion | 62.81 | 75.0 |
| KRH69472 | Soybean | nucleus | 64.32 | 63.37 |
| Solyc05g006170.2.1 | Tomato | plastid | 63.65 | 62.3 |
| KRH74682 | Soybean | plastid | 62.81 | 61.88 |
| PGSC0003DMT400040302 | Potato | plastid | 62.98 | 61.74 |
| GSMUA_Achr9P28160_001 | Banana | plastid | 62.48 | 60.45 |
| TraesCS7B01G100000.1 | Wheat | plastid | 54.1 | 52.69 |
| TraesCS7D01G196000.1 | Wheat | plastid | 53.77 | 52.28 |
| Os06t0237502-00 | Rice | plastid | 53.27 | 51.79 |
| TraesCS7A01G194400.1 | Wheat | plastid | 53.1 | 51.54 |
| Zm00001d044774_P004 | Maize | plastid | 54.61 | 50.23 |
| HORVU7Hr1G039610.2 | Barley | cytosol, peroxisome, plastid | 52.76 | 49.76 |
| KXG19681 | Sorghum | plastid | 53.77 | 48.78 |
| CDY16082 | Canola | cytosol | 4.86 | 25.66 |
| CDY02566 | Canola | cytosol | 7.87 | 23.74 |
| CDX93931 | Canola | cytosol | 12.56 | 22.19 |
| CDY44911 | Canola | cytosol | 8.71 | 20.72 |
| CDX92540 | Canola | cytosol | 17.76 | 18.93 |
| CDY56462 | Canola | cytosol, plastid | 16.75 | 18.69 |
| CDX89174 | Canola | plastid | 15.91 | 17.63 |
| CDX76683 | Canola | mitochondrion | 16.42 | 16.61 |
| CDY27720 | Canola | cytosol, mitochondrion | 6.7 | 16.46 |
| CDY05221 | Canola | cytosol, mitochondrion, nucleus, plastid | 4.19 | 13.09 |
| CDX93932 | Canola | cytosol | 1.51 | 7.83 |
Protein Annotations
| EnsemblPlants:CDX93413 | EnsemblPlantsGene:GSBRNA2T00156073001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PFAM:PF13516 | ProteinID:CDX93413 |
| ProteinID:CDX93413.1 | SEG:seg | SMART:SM00368 | SUPFAM:SSF52047 | UniParc:UPI000253EA1F | MapMan:35.1 |
Description
BnaA06g06350D
Coordinates
chrLK031876:-:85026..88526
Molecular Weight (calculated)
64005.4 Da
IEP (calculated)
7.929
GRAVY (calculated)
-0.126
Length
597 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSTSSL YLHSLPKASS RLGQWKNGCL GGSVSNHRLF ASPGVFLQKR PRLLAIRASS EGGSRRRVYK ESQAATGFPN AKVQQIASSV LPVGSFVVVT
101: FVLWKVVEKF MSPKSSSPGE GKASTQGVKW SIGAGTNLLQ GFAAKVDREA KQRLNEFAKE LRAFRSVDMS GCNFGDEGLF FLAESLGYNQ TLEEVSFSAN
201: GITAAGVKAF DGVLQSNIML KVLNLSGNPI GDEGVKTLCA TLMENSSIEK LQLNSTDLGD EGAKELAELL KRNSTLRVIE LNNNMIDYSG FTSLAGALLE
301: NNTIRHLHLN GNYGGALGAN ALAKGLEGNK SLRELHLHGN SIGDEGIRAL MAGLSSHKGK LALLDLGNNS ITAKGAFYVA EYIKRSKSLV WLNLYMNDIG
401: DEGAEKVADA LKQNRSIATI DIGGNNIHAE GVNAIAQALK DNSIITTLEV GYNPIGPDGA KALSEILKFH GNIKTLKLGW CQIASKGAEY VADMLRYNNT
501: ISVLDLRANG LRDEGASCLA RSLKVVNEAL TSVDLGFNEI RDDGAFAIAQ ALKANEDVTV TSINLGNNFI TKFGQSALTD ARDHVLEMTE KEVEIYF
101: FVLWKVVEKF MSPKSSSPGE GKASTQGVKW SIGAGTNLLQ GFAAKVDREA KQRLNEFAKE LRAFRSVDMS GCNFGDEGLF FLAESLGYNQ TLEEVSFSAN
201: GITAAGVKAF DGVLQSNIML KVLNLSGNPI GDEGVKTLCA TLMENSSIEK LQLNSTDLGD EGAKELAELL KRNSTLRVIE LNNNMIDYSG FTSLAGALLE
301: NNTIRHLHLN GNYGGALGAN ALAKGLEGNK SLRELHLHGN SIGDEGIRAL MAGLSSHKGK LALLDLGNNS ITAKGAFYVA EYIKRSKSLV WLNLYMNDIG
401: DEGAEKVADA LKQNRSIATI DIGGNNIHAE GVNAIAQALK DNSIITTLEV GYNPIGPDGA KALSEILKFH GNIKTLKLGW CQIASKGAEY VADMLRYNNT
501: ISVLDLRANG LRDEGASCLA RSLKVVNEAL TSVDLGFNEI RDDGAFAIAQ ALKANEDVTV TSINLGNNFI TKFGQSALTD ARDHVLEMTE KEVEIYF
001: MASSSTSSLN LHSLPKASSG LGQWKSGFRY ELLGSSVSRN RLFVSPVVIH HRSPRLPAIK AAYNSDGGSK RSRVYKESQA ASGFPNAKVQ QIASSVLPLG
101: SFAVVTFVLW KVVGKFMSPK SPKTSAGENN SSTQGVKWSI GAGTNLLQGF AAKVDREAKQ RLNEFAKELR SFRSVDMSGC NFGDEGLFFL AESLGYNQTV
201: EEVSFSANGI TAAGVKAFDG VLQSNIMLKI LNLSGNPIGD EGAKTLCATL MENSSIEILQ LNSTDIGDEG AKEIAELLKR NSTLRIIELN NNMIDYSGFT
301: SLAGALLENN TIRNLHLNGN YGGALGANAL AKGLEGNKSL RELHLHGNSI GDEGTRALMA GLSSHKGKVA LLDLGNNSIS AKGAFYVAEY IKRSKSLVWL
401: NLYMNDIGDE GAEKIADSLK QNRSIATIDL GGNNIHAEGV NAIAQALKDN AIITTLEVGY NPIGPDGAKA LSEILKFHGN VKTLKLGWCQ IAAKGAEHVA
501: DMLRYNNTIS VLDLRANGLR DEGASCLARS LKVVNEALTS VDLGFNEIRD DGAFAIAQAL KANEDVTVTS INLGNNFITK FGQSALTDAR DHVLEMTEKE
601: VEIFF
101: SFAVVTFVLW KVVGKFMSPK SPKTSAGENN SSTQGVKWSI GAGTNLLQGF AAKVDREAKQ RLNEFAKELR SFRSVDMSGC NFGDEGLFFL AESLGYNQTV
201: EEVSFSANGI TAAGVKAFDG VLQSNIMLKI LNLSGNPIGD EGAKTLCATL MENSSIEILQ LNSTDIGDEG AKEIAELLKR NSTLRIIELN NNMIDYSGFT
301: SLAGALLENN TIRNLHLNGN YGGALGANAL AKGLEGNKSL RELHLHGNSI GDEGTRALMA GLSSHKGKVA LLDLGNNSIS AKGAFYVAEY IKRSKSLVWL
401: NLYMNDIGDE GAEKIADSLK QNRSIATIDL GGNNIHAEGV NAIAQALKDN AIITTLEVGY NPIGPDGAKA LSEILKFHGN VKTLKLGWCQ IAAKGAEHVA
501: DMLRYNNTIS VLDLRANGLR DEGASCLARS LKVVNEALTS VDLGFNEIRD DGAFAIAQAL KANEDVTVTS INLGNNFITK FGQSALTDAR DHVLEMTEKE
601: VEIFF
Arabidopsis Description
emb2004RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93ZV8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.