Factsheet for Solyc05g006170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040302	Potato	plastid	92.3	92.45
VIT_01s0026g00610.t01	Wine grape	mitochondrion	62.3	76.0
AT1G10510.1	Thale cress	plastid	64.1	64.63
CDY20626	Canola	plastid	62.79	64.15
Bra018435.1-P	Field mustard	plastid	62.62	63.88
Bra019926.1-P	Field mustard	plastid	62.3	63.65
CDX93413	Canola	plastid	62.3	63.65
CDY55048	Canola	plastid	62.3	63.65
CDY20954	Canola	plastid	60.82	61.63
KRH69472	Soybean	nucleus	60.98	61.39
KRH74682	Soybean	plastid	59.51	59.9
GSMUA_Achr9P28160_001	Banana	plastid	60.16	59.48
Os06t0237502-00	Rice	plastid	55.9	55.54
TraesCS7D01G196000.1	Wheat	plastid	52.95	52.61
TraesCS7A01G194400.1	Wheat	plastid	52.79	52.36
TraesCS7B01G100000.1	Wheat	plastid	52.46	52.2
HORVU7Hr1G039610.2	Barley	cytosol, peroxisome, plastid	53.11	51.18
KXG19681	Sorghum	plastid	51.97	48.18
Zm00001d044774_P004	Maize	plastid	50.98	47.92
Solyc01g079680.2.1	Tomato	plastid	16.39	18.18
Solyc09g065190.1.1	Tomato	plastid	15.74	17.98

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0009507	GO:GO:0009536
GO:GO:0009941	InterPro:IPR001611	InterPro:IPR032675	UniProt:K4BWE4	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PFAM:PF13516	SMART:SM00368	SUPFAM:SSF52047	EnsemblPlantsGene:Solyc05g006170.2	EnsemblPlants:Solyc05g006170.2.1	UniParc:UPI00027671D3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:850717..856839

Molecular Weight (calculated)

65680.9 Da

IEP (calculated)

8.612

GRAVY (calculated)

-0.070

Length

610 amino acids

Sequence
(BLAST)

001: MGSSSTFSLC SHPTVNFEFN GRKVGYGLQK SLSSSSSYCL IHISPISISS RRRKCVQLRR VTVRAASSSS TGSRRSMSTR RVYKESQAQT PALPVDRIVS
101: FVVPAGAFVV ISFVLWKLVE KILLPKPANT TSEESKSTQG LKWSIAAGTN LLPGFGAKIE RESKLRLNDF AKELRSFSIV DMSGRNFGDE GLFFLAESLA
201: YNQTAEEVNF AANGITADGL KAFDGILQSN IALKTLNLSG NAIGDEGAKC LCDILANNSG IQKLQLNSTG LGDEGAKAIG EMLKKNSTLR VLELNNNLID
301: YSGFSGLAGS LLENKTLQSL HLNGNYGGAL GAAALAKGLE SNKSLRELYL QGNSVGDEGV RALISGLSLR KGKLVLLDLA NNSITARGAF HVAEYVKKSK
401: SLLWLNLYMN DIKDEGAEKI AEALKENRSI TNVDLGGNDI HAKGISAIAE VLKDNSVITS LELGYNPIGP EGAMALAEVL KFHGNVKDLM LGWCQIGAKG
501: AEHFADMLKY NSTISTLDLR ANGLRDEGAI CLARSLKVVN ESLMTLNLGF NEIRDEGAFS IAQALKANED VRLTSLNLAS NFLTKLGQTA LTDARDHVFE
601: MTEKELAVMF

Best Arabidopsis Sequence Match ( AT1G10510.1 )
(BLAST)

001: MASSSTSSLN LHSLPKASSG LGQWKSGFRY ELLGSSVSRN RLFVSPVVIH HRSPRLPAIK AAYNSDGGSK RSRVYKESQA ASGFPNAKVQ QIASSVLPLG
101: SFAVVTFVLW KVVGKFMSPK SPKTSAGENN SSTQGVKWSI GAGTNLLQGF AAKVDREAKQ RLNEFAKELR SFRSVDMSGC NFGDEGLFFL AESLGYNQTV
201: EEVSFSANGI TAAGVKAFDG VLQSNIMLKI LNLSGNPIGD EGAKTLCATL MENSSIEILQ LNSTDIGDEG AKEIAELLKR NSTLRIIELN NNMIDYSGFT
301: SLAGALLENN TIRNLHLNGN YGGALGANAL AKGLEGNKSL RELHLHGNSI GDEGTRALMA GLSSHKGKVA LLDLGNNSIS AKGAFYVAEY IKRSKSLVWL
401: NLYMNDIGDE GAEKIADSLK QNRSIATIDL GGNNIHAEGV NAIAQALKDN AIITTLEVGY NPIGPDGAKA LSEILKFHGN VKTLKLGWCQ IAAKGAEHVA
501: DMLRYNNTIS VLDLRANGLR DEGASCLARS LKVVNEALTS VDLGFNEIRD DGAFAIAQAL KANEDVTVTS INLGNNFITK FGQSALTDAR DHVLEMTEKE
601: VEIFF

Arabidopsis Description

emb2004RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93ZV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.