Factsheet for Solyc01g079680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
plasma membrane 1
plastid 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g065660.2.1
Solyc07g066170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19320.1	Solyc07g066170.2.1	AT4G26455.1	17600715
AT5G19320.1	Solyc02g065660.2.1	AT5G11390.1	18591351
AT5G19320.1	Solyc07g066170.2.1	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023310	Potato	plastid	92.91	92.41
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	69.45	70.87
KRG91256	Soybean	endoplasmic reticulum	67.82	70.11
AT5G19320.1	Thale cress	cytosol	68.91	69.54
KRH35557	Soybean	endoplasmic reticulum, nucleus	66.73	68.86
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	65.09	68.06
Solyc09g065190.1.1	Tomato	plastid	65.82	67.79
CDX92540	Canola	cytosol	67.45	66.25
CDY02566	Canola	cytosol	23.09	64.14
CDY16082	Canola	cytosol	13.09	63.72
TraesCS1A01G256200.1	Wheat	cytosol	62.55	62.55
Os05t0543200-01	Rice	plasma membrane	61.82	62.5
TraesCS1B01G266900.1	Wheat	plastid	62.55	62.43
GSMUA_Achr11P...	Banana	cytosol, plastid	62.0	62.23
Bra026911.1-P	Field mustard	cytosol	14.91	62.12
EES05430	Sorghum	cytosol, nucleus, plastid	61.09	61.88
TraesCS1D01G255600.1	Wheat	cytosol, plastid	61.82	61.26
EES05435	Sorghum	cytosol, plastid	61.27	60.39
TraesCS3B01G433100.1	Wheat	cytosol, plastid	60.73	60.29
Zm00001d051112_P001	Maize	plasma membrane	56.55	60.27
TraesCS3D01G394300.1	Wheat	cytosol, plastid	60.36	59.93
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	56.73	59.66
HORVU3Hr1G090080.1	Barley	plastid	59.45	59.03
TraesCS3A01G400100.1	Wheat	plastid	60.18	56.2
EES07543	Sorghum	cytosol	25.64	56.18
HORVU1Hr1G063300.3	Barley	plastid	62.0	52.22
Zm00001d034691_P001	Maize	cytosol	32.55	47.11
Zm00001d052426_P001	Maize	cytosol	11.27	45.26
GSMUA_Achr8P13660_001	Banana	cytosol	48.91	43.95
Os05t0409200-00	Rice	cytosol	8.55	43.93
AT3G06000.1	Thale cress	cytosol	16.73	43.6
Bra020788.1-P	Field mustard	cytosol, mitochondrion	16.18	37.71
CDY27720	Canola	cytosol, mitochondrion	16.18	36.63
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	11.45	32.98
Zm00001d043604_P002	Maize	cytosol	30.73	31.47
Zm00001d046105_P001	Maize	peroxisome	30.55	28.57
Solyc05g006170.2.1	Tomato	plastid	18.18	16.39

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214	UniProt:K4AXL3	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PFAM:PF13516	PFAM:PF13943	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368	SUPFAM:SSF52047
EnsemblPlantsGene:Solyc01g079680.2	EnsemblPlants:Solyc01g079680.2.1	UniParc:UPI0002761F30	InterPro:WPP_dom	InterPro:WPP_sf	SEG:seg

Description

No Description!

Coordinates

chr1:+:78795201..78798172

Molecular Weight (calculated)

60217.9 Da

IEP (calculated)

4.390

GRAVY (calculated)

-0.401

Length

550 amino acids

Sequence
(BLAST)

001: MDATTDNSQR RPFSIKLWPP SENTRKMLVE RMTNNLSSPT IFTRKYRSLS KEEAAKNAEE IEDAAFTIAN QHYEKEPDGD GSSAVQLYAR ECSKLILEIL
101: KKTPKSEDKE ISISEVVPTV QETFFDISKG KRAFIEAEEA QELLKPLKEP GNSYSKICFS NRSFGIDAAR IAGPILATLK DQLKEVDLSD FVAGRNEAEA
201: LDVMNIFSEA LEGSNLKFLN LSDNALGEKG VRAFGKLLQS QTNLEELFLM NDGISQEAAN AVSELVPSTE KLKILHFHNN MTGDEGAVAI AEIVKRSPLL
301: EDFRCSSTRV GSEGGSALCE ALGMCSHLKK LDLRDNMFGP EVGLVLSKAL SQHENLKEIY LSYLNLEDEG AIAIANALKD SAPSLAVLEM AGNDITAEAA
401: SAIASCIAAK QLLAKLSLGE NELKDEGVIQ IAKALEGHKH LTEVDMSSNA LRRAGARVLA QTVLQKDEFK LLNVNGNFIS EEGVDELKEI FKKSPEMLAS
501: LEDNDPEGED EGDEEKESGD EDVEDELESK LKNLDVKQEA SVDAHAPDSN

Best Arabidopsis Sequence Match ( AT5G19320.2 )
(BLAST)

001: MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED

Arabidopsis Description

RANGAP2RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.