Factsheet for HORVU1Hr1G063300.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
endoplasmic reticulum 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G081800.3
HORVU3Hr1G057330.1
HORVU5Hr1G071910.1
HORVU6Hr1G068770.1
HORVU7Hr1G007940.7
HORVU7Hr1G048940.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	HORVU6Hr1G068770.1	AT3G50910.1	21798944
AT3G63130.1	HORVU2Hr1G081800.3	AT4G26455.1	17600715
AT3G63130.1	HORVU5Hr1G071910.1	AT4G26455.1	17600715
AT3G63130.1	HORVU7Hr1G048940.3	AT4G26455.1	17600715
AT3G63130.1	HORVU2Hr1G081800.3	AT4G26455.1	20579133
AT3G63130.1	HORVU5Hr1G071910.1	AT4G26455.1	20579133
AT3G63130.1	HORVU7Hr1G048940.3	AT4G26455.1	20579133
AT3G63130.1	HORVU3Hr1G057330.1	AT5G11390.1	18591351
AT3G63130.1	HORVU7Hr1G007940.7	AT5G11390.1	18591351
AT3G63130.1	HORVU2Hr1G081800.3	AT5G56210.1	17600715
AT3G63130.1	HORVU5Hr1G071910.1	AT5G56210.1	17600715
AT3G63130.1	HORVU7Hr1G048940.3	AT5G56210.1	17600715
AT3G63130.1	HORVU2Hr1G081800.3	AT5G56210.1	20579133
AT3G63130.1	HORVU5Hr1G071910.1	AT5G56210.1	20579133
AT3G63130.1	HORVU7Hr1G048940.3	AT5G56210.1	20579133
AT5G19320.1	HORVU2Hr1G081800.3	AT4G26455.1	17600715
AT5G19320.1	HORVU5Hr1G071910.1	AT4G26455.1	17600715
AT5G19320.1	HORVU7Hr1G048940.3	AT4G26455.1	17600715
AT5G19320.1	HORVU3Hr1G057330.1	AT5G11390.1	18591351
AT5G19320.1	HORVU7Hr1G007940.7	AT5G11390.1	18591351
AT5G19320.1	HORVU2Hr1G081800.3	AT5G56210.1	17600715
AT5G19320.1	HORVU5Hr1G071910.1	AT5G56210.1	17600715
AT5G19320.1	HORVU7Hr1G048940.3	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G256200.1	Wheat	cytosol	79.33	94.18
TraesCS1B01G266900.1	Wheat	plastid	79.17	93.83
TraesCS1D01G255600.1	Wheat	cytosol, plastid	78.25	92.07
HORVU3Hr1G090080.1	Barley	plastid	74.43	87.73
Os05t0543200-01	Rice	plasma membrane	71.98	86.4
EES05430	Sorghum	cytosol, nucleus, plastid	70.44	84.71
Zm00001d051112_P001	Maize	plasma membrane	64.93	82.17
EES05435	Sorghum	cytosol, plastid	69.98	81.9
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	64.47	80.5
EES07543	Sorghum	cytosol	29.4	76.49
VIT_07s0104g00520.t01	Wine grape	plastid	56.66	68.39
GSMUA_Achr11P...	Banana	cytosol, plastid	56.51	67.34
KRH71426	Soybean	nucleus	54.36	66.6
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	54.67	66.23
KRH32020	Soybean	cytosol	54.06	66.1
Solyc09g065190.1.1	Tomato	plastid	53.45	65.36
PGSC0003DMT400086322	Potato	cytosol	53.45	65.36
KRG91256	Soybean	endoplasmic reticulum	52.37	64.29
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	51.45	63.88
KRH35557	Soybean	endoplasmic reticulum, nucleus	51.91	63.6
Zm00001d052426_P001	Maize	cytosol	13.17	62.77
Solyc01g079680.2.1	Tomato	plastid	52.22	62.0
AT5G19320.1	Thale cress	cytosol	51.45	61.65
PGSC0003DMT400023310	Potato	plastid	51.76	61.12
CDX92540	Canola	cytosol	52.22	60.89
Zm00001d034691_P001	Maize	cytosol	35.38	60.79
AT3G63130.1	Thale cress	plastid	49.46	60.37
CDY56462	Canola	cytosol, plastid	49.16	60.0
Bra007730.1-P	Field mustard	cytosol, plastid	49.0	59.81
CDX93931	Canola	cytosol	30.47	58.88
Bra040432.1-P	Field mustard	plastid	47.78	58.21
CDX89174	Canola	plastid	47.78	57.88
CDY02566	Canola	cytosol	17.46	57.58
Os05t0409200-00	Rice	cytosol	9.34	57.01
CDY16082	Canola	cytosol	9.8	56.64
CDX76683	Canola	mitochondrion	49.31	54.58
Bra026911.1-P	Field mustard	cytosol	10.57	52.27
CDX93932	Canola	cytosol	9.19	52.17
GSMUA_Achr8P13660_001	Banana	cytosol	45.33	48.37
Bra013834.1-P	Field mustard	cytosol	9.65	47.73
Bra020034.1-P	Field mustard	cytosol	16.54	43.9
CDY44911	Canola	cytosol	16.54	43.03
AT3G06000.1	Thale cress	cytosol	13.02	40.28
Zm00001d043604_P002	Maize	cytosol	31.09	37.8
Zm00001d046105_P001	Maize	peroxisome	31.7	35.2
CDY27720	Canola	cytosol, mitochondrion	13.02	34.98
Bra020788.1-P	Field mustard	cytosol, mitochondrion	12.25	33.9
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	9.19	31.41
HORVU7Hr1G039610.2	Barley	cytosol, peroxisome, plastid	14.24	14.69

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	UniProt:A0A287FXT0	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU1Hr1G063300	EnsemblPlants:HORVU1Hr1G063300.3	InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13516	PFAM:PF13943	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248
SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI000B47478F	InterPro:WPP_dom	InterPro:WPP_sf	SEG:seg

Description

No Description!

Coordinates

chrchr1H:+:454301511..454304993

Molecular Weight (calculated)

70995.2 Da

IEP (calculated)

4.627

GRAVY (calculated)

-0.356

Length

653 amino acids

Sequence
(BLAST)

001: PRPERETLPP HNTNPRSAGR RFFPFQYRAP PLPPTLFFRR VLSVHSPRRA ARTSRRRSRP RGEAAASRLQ SAAAIVVLEV DGAAGILFLC CRLLCEVPPF
101: HMDSTAQDFQ PRTFTIKLWP PSESTRLMLV ERMTKNLSDE SIFSRKYGIL GKEEAHENAK RIEEVCFASA DEHFKKEPDG DGSSAVQLYA KETSKLMLEV
201: LKKGPRTTAE PEAPVIDAPL EPAATVFDIS GGKRAFIEAE EAKELLSPLT KPGNSYKRIC FSNRSFGIGA ANVAGPILES IKSQLTEVDI SDFVAGRPED
301: EALDVMRIFS KALAGSVLRY LNISDNALGE KGVRAFTELL KSQGDLEELY VMNDGISGEA AKALSELIPS TEKLKVLHFH NNMTGDEGAM PIAEMVKRSP
401: NLESFRCSAT RIGSDGGVAL AEALGTCTRL KKLDIRDNLF GVEAGVALSK TLPKLGGLVE LYLSDLNLEN EGTIAIVDVL KQSAPQLEVL EMAGNEITAK
501: AAKAVAECLT AMQSLKKLTL AENELKDAGA VTIAKSLQEG HPGLEELDVS TNLFQRSGAR CFAQAVANKP GFALLNINSN FISDEGIDEV KEILKGGENS
601: LEVLGPLDEN DPEGDPEDDE EEEDDEDEEK DGNDNGDGGL GSKLQGLKVE EED

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.