Factsheet for VIT_19s0014g03800.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0083g00730.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19320.1	VIT_19s0015g01790.t01	AT4G26455.1	17600715
AT5G19320.1	VIT_14s0083g00730.t01	AT5G11390.1	18591351
AT5G19320.1	VIT_19s0015g01790.t01	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	95.82	93.51
VIT_07s0104g00520.t01	Wine grape	plastid	73.0	70.98
KRG91256	Soybean	endoplasmic reticulum	69.96	69.17
KRH35557	Soybean	endoplasmic reticulum, nucleus	69.77	68.86
AT5G19320.1	Thale cress	cytosol	68.82	66.42
Solyc01g079680.2.1	Tomato	plastid	68.06	65.09
PGSC0003DMT400023310	Potato	plastid	67.49	64.2
CDX92540	Canola	cytosol	67.11	63.04
Os05t0543200-01	Rice	plasma membrane	64.64	62.5
CDY16082	Canola	cytosol	13.31	61.95
EES05430	Sorghum	cytosol, nucleus, plastid	63.31	61.33
GSMUA_Achr11P...	Banana	cytosol, plastid	63.88	61.31
TraesCS1A01G256200.1	Wheat	cytosol	63.31	60.55
Zm00001d051112_P001	Maize	plasma membrane	59.32	60.47
TraesCS1B01G266900.1	Wheat	plastid	63.31	60.44
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	59.89	60.23
EES05435	Sorghum	cytosol, plastid	63.69	60.04
Bra026911.1-P	Field mustard	cytosol	15.02	59.85
EES07543	Sorghum	cytosol	28.52	59.76
TraesCS1D01G255600.1	Wheat	cytosol, plastid	62.93	59.64
TraesCS3D01G394300.1	Wheat	cytosol, plastid	62.74	59.57
TraesCS3B01G433100.1	Wheat	cytosol, plastid	62.55	59.39
CDY02566	Canola	cytosol	22.24	59.09
HORVU3Hr1G090080.1	Barley	plastid	61.79	58.66
TraesCS3A01G400100.1	Wheat	plastid	62.36	55.69
HORVU1Hr1G063300.3	Barley	plastid	63.88	51.45
Zm00001d034691_P001	Maize	cytosol	34.03	47.11
Zm00001d052426_P001	Maize	cytosol	11.03	42.34
AT3G06000.1	Thale cress	cytosol	16.54	41.23
GSMUA_Achr8P13660_001	Banana	cytosol	47.72	41.01
Os05t0409200-00	Rice	cytosol	7.98	39.25
Bra020788.1-P	Field mustard	cytosol, mitochondrion	16.16	36.02
CDY27720	Canola	cytosol, mitochondrion	16.16	34.98
Zm00001d043604_P002	Maize	cytosol	31.37	30.73
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	10.84	29.84
Zm00001d046105_P001	Maize	peroxisome	31.75	28.4
VIT_01s0026g00610.t01	Wine grape	mitochondrion	17.11	18.0

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	EMBL:AM485540	ProteinID:CAN81931	ProteinID:CAN81931.1
ProteinID:CCB46396	ProteinID:CCB46396.1	UniProt:F6H2F2	EMBL:FN595229	GO:GO:0003674	GO:GO:0003824
GO:GO:0003951	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13516	PFAM:PF13943	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248
SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI000210A94A	ArrayExpress:VIT_19s0014g03800	EnsemblPlantsGene:VIT_19s0014g03800	EnsemblPlants:VIT_19s0014g03800.t01
InterPro:WPP_dom	InterPro:WPP_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:-:3894331..3895956

Molecular Weight (calculated)

56910.2 Da

IEP (calculated)

4.256

GRAVY (calculated)

-0.278

Length

526 amino acids

Sequence
(BLAST)

001: MDATTMNPEG RAFSIKLWPP SQTTRLLLVE RMANNLSTPS IFTREYGSLS KEEVRENAKQ IEEPDGDGGS AVQLYAKECS KLILEVLKRG PITKVDGAKP
101: TSKTFNEACE TVFDISKGQR AFVEAEEAEE LLRPLKEPGN SYTKICFSNR SFGLGAARVA EPILASLKDQ LKEVDLSDFI AGRSEGEALE VMAIFSEALE
201: GCVLKSLDLS NNALGEKGVR AFGALLKSQS SLEELYLMND GISEEAARAV CELIPSTEKL RVLQFHNNMT GDEGALAISE VVKQSPMLED FRCSSTRIGS
301: DGGVALSEAL QTFTNLKNLD LRDNMFGVEA GVALSKALAK HADLTEAYLS YLNLEDEGAV AIANVLKESA SALEVLEMAG NDITAEAAPA LAACIAAKQL
401: ITKLNLADTE LRDEGAIQIS KALEDGDAQL KGVDLSSNFM RRAGARCLTR AVVHKPGLKL LNMNGNFISD EGIDEVKNIF NEFPNVLGSL DENDPEGEDD
501: NESGEGEDEG DELESKLKNL EVHQED

Best Arabidopsis Sequence Match ( AT5G19320.2 )
(BLAST)

001: MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED

Arabidopsis Description

RANGAP2RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.