Factsheet for Bra020788.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27720	Canola	cytosol, mitochondrion	83.05	80.66
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	47.88	59.16
AT3G06000.1	Thale cress	cytosol	50.42	56.4
Os05t0409200-00	Rice	cytosol	16.1	35.51
Bra013834.1-P	Field mustard	cytosol	19.07	34.09
Bra026911.1-P	Field mustard	cytosol	15.25	27.27
EES07543	Sorghum	cytosol	22.03	20.72
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	36.86	16.63
PGSC0003DMT400023310	Potato	plastid	38.14	16.27
Solyc01g079680.2.1	Tomato	plastid	37.71	16.18
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	36.02	16.16
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	36.86	16.14
KRG91256	Soybean	endoplasmic reticulum	36.02	15.98
KRH35557	Soybean	endoplasmic reticulum, nucleus	36.02	15.95
EES05430	Sorghum	cytosol, nucleus, plastid	36.02	15.65
TraesCS1A01G256200.1	Wheat	cytosol	36.02	15.45
TraesCS1B01G266900.1	Wheat	plastid	36.02	15.43
EES05435	Sorghum	cytosol, plastid	36.44	15.41
Bra007730.1-P	Field mustard	cytosol, plastid	34.75	15.33
Zm00001d051112_P001	Maize	plasma membrane	33.47	15.31
Os05t0543200-01	Rice	plasma membrane	35.17	15.26
TraesCS1D01G255600.1	Wheat	cytosol, plastid	35.59	15.14
GSMUA_Achr11P...	Banana	cytosol, plastid	34.75	14.96
TraesCS3D01G394300.1	Wheat	cytosol, plastid	34.32	14.62
TraesCS3B01G433100.1	Wheat	cytosol, plastid	34.32	14.62
Bra040432.1-P	Field mustard	plastid	33.05	14.55
HORVU3Hr1G090080.1	Barley	plastid	33.05	14.08
TraesCS3A01G400100.1	Wheat	plastid	34.32	13.75
GSMUA_Achr8P13660_001	Banana	cytosol	31.78	12.25
HORVU1Hr1G063300.3	Barley	plastid	33.9	12.25
Bra020034.1-P	Field mustard	cytosol	8.9	8.54
Zm00001d034691_P001	Maize	cytosol	13.14	8.16
Bra019926.1-P	Field mustard	plastid	17.8	7.04
Zm00001d052426_P001	Maize	cytosol	3.81	6.57
Bra018435.1-P	Field mustard	plastid	16.53	6.52
Zm00001d043604_P002	Maize	cytosol	14.41	6.33
Zm00001d046105_P001	Maize	peroxisome	11.86	4.76

Protein Annotations

EnsemblPlants:Bra020788.1	EnsemblPlants:Bra020788.1-P	EnsemblPlantsGene:Bra020788	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	ncoils:Coil
PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	PFAM:PF13516	SEG:seg	SMART:SM00368	SUPFAM:SSF52047
UniParc:UPI0002545D83	UniProt:M4DW94	MapMan:35.1	:	:	:

Description

AT3G06000 (E=3e-064) | leucine-rich repeat family protein

Coordinates

chrA02:+:23126080..23126790

Molecular Weight (calculated)

26501.6 Da

IEP (calculated)

4.157

GRAVY (calculated)

-0.317

Length

236 amino acids

Sequence
(BLAST)

001: MAKRQALLVN MRNKIKELEV KMAETSLTNE DAMEEKQLCD SIAKVRVPMG KAFSNFNFVT IINLNYTNLE NEGTIALVNA LENSAPSLKA IEMAGNNITY
101: EAAPDIAACL VAKKHLKRLN LSNNDLKDEG CFEIAYIMEP LEVKYVDMSS NNLTREGALS LALVAVKKEG FEMLNIDGNM ISFEGIEEIM EIFKNCPKLL
201: GPFDDNDPYE GDEDDGYDDD QEWESESLHE ILKMNL

Best Arabidopsis Sequence Match ( AT3G06000.1 )
(BLAST)

001: MVDTSLTNED TIEETAFETC THIKVGVSMS KPFSSFSFLT VINLSYTNLE NGGAIALVNA LKNSAPSLQV IEMAGNNITY EAATAIAVCL AAKRHLKKLN
101: LSENDLKDEG CVEIVKSMED WELEYVDMSY NDLRREGALR LARVVVKKGS FKMLNIDGNM ISLKGIEEIK VIFTNCPKLL GPLDKNVYNV DDDDDLREND
201: EDEFVSVFIF Y

Arabidopsis Description

F2O10.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SFG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.