Factsheet for TraesCS1D01G255600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G331000.1
TraesCS2B01G351300.1
TraesCS2D01G332000.1
TraesCS3A01G158400.1
TraesCS3D01G166100.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS6A01G272000.1
TraesCS6B01G299600.1
TraesCS6D01G252200.1
TraesCS7A01G042800.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G038700.1
TraesCS7D01G238200.1
TraesCSU01G064900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	TraesCS6A01G272000.1	AT3G50910.1	21798944
AT3G63130.1	TraesCS6B01G299600.1	AT3G50910.1	21798944
AT3G63130.1	TraesCS6D01G252200.1	AT3G50910.1	21798944
AT3G63130.1	TraesCS2A01G331000.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS2B01G351300.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS2D01G332000.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS5A01G257000.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS5B01G256500.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS5D01G265600.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS7A01G240200.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS7B01G135800.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS7D01G238200.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS2A01G331000.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS2B01G351300.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS2D01G332000.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS5A01G257000.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS5B01G256500.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS5D01G265600.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS7A01G240200.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS7B01G135800.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS7D01G238200.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS3A01G158400.1	AT5G11390.1	18591351
AT3G63130.1	TraesCS3D01G166100.1	AT5G11390.1	18591351
AT3G63130.1	TraesCS7A01G042800.1	AT5G11390.1	18591351
AT3G63130.1	TraesCS7D01G038700.1	AT5G11390.1	18591351
AT3G63130.1	TraesCSU01G064900.1	AT5G11390.1	18591351
AT3G63130.1	TraesCS2A01G331000.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS2B01G351300.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS2D01G332000.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS5A01G257000.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS5B01G256500.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS5D01G265600.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS7A01G240200.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS7B01G135800.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS7D01G238200.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS2A01G331000.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS2B01G351300.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS2D01G332000.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS5A01G257000.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS5B01G256500.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS5D01G265600.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS7A01G240200.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS7B01G135800.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS7D01G238200.1	AT5G56210.1	20579133
AT5G19320.1	TraesCS2A01G331000.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS2B01G351300.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS2D01G332000.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS5A01G257000.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS5B01G256500.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS5D01G265600.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS7A01G240200.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS7B01G135800.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS7D01G238200.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS3A01G158400.1	AT5G11390.1	18591351
AT5G19320.1	TraesCS3D01G166100.1	AT5G11390.1	18591351
AT5G19320.1	TraesCS7A01G042800.1	AT5G11390.1	18591351
AT5G19320.1	TraesCS7D01G038700.1	AT5G11390.1	18591351
AT5G19320.1	TraesCSU01G064900.1	AT5G11390.1	18591351
AT5G19320.1	TraesCS2A01G331000.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS2B01G351300.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS2D01G332000.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS5A01G257000.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS5B01G256500.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS5D01G265600.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS7A01G240200.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS7B01G135800.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS7D01G238200.1	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G266900.1	Wheat	plastid	95.68	96.37
TraesCS1A01G256200.1	Wheat	cytosol	92.43	93.27
TraesCS3D01G394300.1	Wheat	cytosol, plastid	86.31	86.46
Os05t0543200-01	Rice	plasma membrane	83.24	84.93
EES05430	Sorghum	cytosol, nucleus, plastid	81.62	83.43
Zm00001d051112_P001	Maize	plasma membrane	76.4	82.17
EES05435	Sorghum	cytosol, plastid	81.26	80.82
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	75.68	80.31
HORVU1Hr1G063300.3	Barley	plastid	92.07	78.25
EES07543	Sorghum	cytosol	34.59	76.49
GSMUA_Achr11P...	Banana	cytosol, plastid	66.13	66.97
VIT_07s0104g00520.t01	Wine grape	plastid	65.05	66.73
KRH32020	Soybean	cytosol	63.42	65.92
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	63.6	65.49
KRH71426	Soybean	nucleus	62.52	65.1
Solyc09g065190.1.1	Tomato	plastid	62.52	64.98
PGSC0003DMT400086322	Potato	cytosol	62.52	64.98
KRG91256	Soybean	endoplasmic reticulum	60.72	63.35
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	59.64	62.93
KRH35557	Soybean	endoplasmic reticulum, nucleus	60.18	62.66
PGSC0003DMT400023310	Potato	plastid	61.98	62.21
AT5G19320.1	Thale cress	cytosol	60.72	61.83
Solyc01g079680.2.1	Tomato	plastid	61.26	61.82
CDY56462	Canola	cytosol, plastid	58.92	61.12
CDX92540	Canola	cytosol	61.44	60.89
Os05t0409200-00	Rice	cytosol	11.71	60.75
Bra007730.1-P	Field mustard	cytosol, plastid	58.56	60.75
Zm00001d034691_P001	Maize	cytosol	41.44	60.53
AT3G63130.1	Thale cress	plastid	58.2	60.37
Zm00001d052426_P001	Maize	cytosol	14.77	59.85
CDX93931	Canola	cytosol	35.86	58.88
Bra040432.1-P	Field mustard	plastid	56.76	58.77
CDX89174	Canola	plastid	56.76	58.44
CDY02566	Canola	cytosol	20.54	57.58
CDY16082	Canola	cytosol	11.53	56.64
CDX76683	Canola	mitochondrion	58.74	55.25
CDX93932	Canola	cytosol	10.99	53.04
Bra026911.1-P	Field mustard	cytosol	12.43	52.27
Bra013834.1-P	Field mustard	cytosol	11.71	49.24
GSMUA_Achr8P13660_001	Banana	cytosol	52.43	47.55
Bra020034.1-P	Field mustard	cytosol	19.82	44.72
CDY44911	Canola	cytosol	19.82	43.82
AT3G06000.1	Thale cress	cytosol	15.68	41.23
Zm00001d043604_P002	Maize	cytosol	36.4	37.62
CDY27720	Canola	cytosol, mitochondrion	15.68	35.8
Bra020788.1-P	Field mustard	cytosol, mitochondrion	15.14	35.59
Zm00001d046105_P001	Maize	peroxisome	37.12	35.03
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	11.53	33.51
TraesCS7D01G196000.1	Wheat	plastid	16.04	14.5

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13516
PFAM:PF13943	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368	SUPFAM:SSF52047	EnsemblPlantsGene:TraesCS1D01G255600
EnsemblPlants:TraesCS1D01G255600.1	InterPro:WPP_dom	InterPro:WPP_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:+:348051835..348053502

Molecular Weight (calculated)

59961.8 Da

IEP (calculated)

4.317

GRAVY (calculated)

-0.367

Length

555 amino acids

Sequence
(BLAST)

001: MESTAEGLQP RTFSVKLWPP SESTRLMLVE RMTKNLSAEC IFSRKYGILS KEEAHENAKR IEEVCFASAE EHFKKEPDGD GSSAVQLYAK ETSKLMLEVL
101: KKGPRTTEEP EAPVVDTPLE PADTVFDISG GKRAFIEAEE AKELLSPLTK PGNSYKRICF SNRSFGIGAA NVAGPILESI KSQLTEVDIS DFVAGRPEDE
201: ALDVMRIFSK ALAGSVLSYL NISDNALGEK GVRAFTELLK SQGDLEELYV MNDGISEEAA KALSELIPST EKLKVLHFHN NMTGDEGAMP IAEMVKRSPN
301: LESFRCSATR IGSDGGVALA EALGTCTRLK KLDIRDNLFG VEAGVALSKT LPKLGGLVEL YLSDLNLENE GTIAIVNVLK QSAPQLEVLE MAGNEITAKA
401: AKAVAECLTA MQSLKKLTLA ENELKDDGAV TIAKSLQEGH PDLKELDVST NLFQRSGARC FAQAVTNKPG FVLLNINSNF ISNKGVDEVK EILKGGKNSL
501: EVLGPLDEND PEGDPEDGED EEDGEDADDE EKDGDDNGDG GLGSKLQGLK VEEED

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.