CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 4
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32020	Soybean	cytosol	93.43	93.26
VIT_07s0104g00520.t01	Wine grape	plastid	75.23	74.12
PGSC0003DMT400086322	Potato	cytosol	70.17	70.04
Solyc09g065190.1.1	Tomato	plastid	69.98	69.85
KRG91256	Soybean	endoplasmic reticulum	69.23	69.36
KRH35557	Soybean	endoplasmic reticulum, nucleus	67.54	67.54
Os05t0543200-01	Rice	plasma membrane	65.85	64.52
TraesCS1A01G256200.1	Wheat	cytosol	66.04	64.0
TraesCS1B01G266900.1	Wheat	plastid	65.85	63.7
GSMUA_Achr11P...	Banana	cytosol, plastid	65.1	63.32
TraesCS1D01G255600.1	Wheat	cytosol, plastid	65.1	62.52
TraesCS3D01G394300.1	Wheat	cytosol, plastid	64.92	62.45
EES05430	Sorghum	cytosol, nucleus, plastid	63.6	62.43
TraesCS3B01G433100.1	Wheat	cytosol, plastid	64.73	62.27
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	60.98	62.14
Zm00001d051112_P001	Maize	plasma membrane	59.85	61.82
HORVU3Hr1G090080.1	Barley	plastid	63.98	61.55
EES05435	Sorghum	cytosol, plastid	64.35	61.47
EES07543	Sorghum	cytosol	28.14	59.76
TraesCS3A01G400100.1	Wheat	plastid	64.17	58.06
HORVU1Hr1G063300.3	Barley	plastid	66.6	54.36
Zm00001d052426_P001	Maize	cytosol	13.7	53.28
Zm00001d034691_P001	Maize	cytosol	34.52	48.42
Bra020034.1-P	Field mustard	cytosol	21.58	46.75
GSMUA_Achr8P13660_001	Banana	cytosol	53.1	46.24
CDY44911	Canola	cytosol	21.58	45.82
Os05t0409200-00	Rice	cytosol	8.07	40.19
Zm00001d043604_P002	Maize	cytosol	31.33	31.1
Zm00001d046105_P001	Maize	peroxisome	32.08	29.08
KRH69472	Soybean	nucleus	20.64	18.15
KRH74682	Soybean	plastid	19.51	17.16

Protein Annotations

Gene3D:1.10.246.200	EntrezGene:100796487	MapMan:23.5.1.5	Gene3D:3.80.10.10	EMBL:ACUP02000898	EnsemblPlantsGene:GLYMA_02G147200
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214
UniProt:K7K8E5	EnsemblPlants:KRH71426	ProteinID:KRH71426	ProteinID:KRH71426.1	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PFAM:PF13516	PFAM:PF13943	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368	SUPFAM:SSF52047
UniParc:UPI0002336E11	InterPro:WPP_dom	InterPro:WPP_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:15196606..15199496

Molecular Weight (calculated)

57754.2 Da

IEP (calculated)

4.411

GRAVY (calculated)

-0.278

Length

533 amino acids

Sequence
(BLAST)

001: MDSTSQAYQH RPLTIKLWPP SQSTRLMLVE RMTKNLTTPS IFSRKYGLLS KEEAEEDAKH IEDVAFATAT QHFEKEPDGD GSSAVQIYAK ESSKLMLEAL
101: KRGPKVKEDG ELITEKSGST AETVFDISGG RRDFISGEEA AEVLKPLTGP KYYTKICFSN RSFGLDAARV AEPILLSVKD QLKEVDLSDF IAGRPEAEAL
201: EVMTIFSSAL EGSVLRYLNL SNNAMGEKGV RAFRSLLKSQ TSLEELYLMN DGISEEAAKA VSELLPSTEK LRVLHFHNNM TGDEGAIAIA EIVKHSPALE
301: DFRCSSTRVG SDGGVALAEA LGACKHLRKL DLRDNMFGEE AGVALSKVIP AFTDLTEIYL SYLNLEDDGA EALANALKES APSLEILDLA GNDITAKASA
401: SVAACISSKQ FLTKLNLSEN ELKDEGAVLI SKALEGGHGQ LIEVDLSTNS ITWSGAKLVA EAVVGKPGFK LLNINANFIS DEGIDELKNI FKNSPDMLGP
501: LDENNPDGED TDEEAEEDAD HDELESKLKG LGI

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.