CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES14314
KXG21620
OQU78405
OQU81760
OQU85551
OQU86053

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	OQU78405	AT3G50910.1	21798944
AT3G63130.1	OQU85551	AT3G50910.1	21798944
AT3G63130.1	EER96942	AT4G26455.1	17600715
AT3G63130.1	EES14314	AT4G26455.1	17600715
AT3G63130.1	OQU81760	AT4G26455.1	17600715
AT3G63130.1	EER96942	AT4G26455.1	20579133
AT3G63130.1	EES14314	AT4G26455.1	20579133
AT3G63130.1	OQU81760	AT4G26455.1	20579133
AT3G63130.1	KXG21620	AT5G11390.1	18591351
AT3G63130.1	OQU86053	AT5G11390.1	18591351
AT3G63130.1	EER96942	AT5G56210.1	17600715
AT3G63130.1	EES14314	AT5G56210.1	17600715
AT3G63130.1	OQU81760	AT5G56210.1	17600715
AT3G63130.1	EER96942	AT5G56210.1	20579133
AT3G63130.1	EES14314	AT5G56210.1	20579133
AT3G63130.1	OQU81760	AT5G56210.1	20579133
AT5G19320.1	EER96942	AT4G26455.1	17600715
AT5G19320.1	EES14314	AT4G26455.1	17600715
AT5G19320.1	OQU81760	AT4G26455.1	17600715
AT5G19320.1	KXG21620	AT5G11390.1	18591351
AT5G19320.1	OQU86053	AT5G11390.1	18591351
AT5G19320.1	EER96942	AT5G56210.1	17600715
AT5G19320.1	EES14314	AT5G56210.1	17600715
AT5G19320.1	OQU81760	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05435	Sorghum	cytosol, plastid	94.84	92.29
Os05t0543200-01	Rice	plasma membrane	87.11	86.95
EES07543	Sorghum	cytosol	39.59	85.66
TraesCS1B01G266900.1	Wheat	plastid	83.98	82.76
TraesCS1A01G256200.1	Wheat	cytosol	83.79	82.73
TraesCS1D01G255600.1	Wheat	cytosol, plastid	83.43	81.62
TraesCS3D01G394300.1	Wheat	cytosol, plastid	82.87	81.23
TraesCS3B01G433100.1	Wheat	cytosol, plastid	82.32	80.69
HORVU3Hr1G090080.1	Barley	plastid	82.14	80.51
TraesCS3A01G400100.1	Wheat	plastid	82.14	75.72
HORVU1Hr1G063300.3	Barley	plastid	84.71	70.44
GSMUA_Achr11P...	Banana	cytosol, plastid	69.06	68.43
VIT_07s0104g00520.t01	Wine grape	plastid	65.93	66.17
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	64.64	65.12
Zm00001d052426_P001	Maize	cytosol	16.39	64.96
KRH35557	Soybean	endoplasmic reticulum, nucleus	62.98	64.17
KRH32020	Soybean	cytosol	62.62	63.67
KRH71426	Soybean	nucleus	62.43	63.6
KRG91256	Soybean	endoplasmic reticulum	62.06	63.35
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	61.33	63.31
Solyc09g065190.1.1	Tomato	plastid	62.25	63.3
PGSC0003DMT400086322	Potato	cytosol	62.25	63.3
AT5G19320.1	Thale cress	cytosol	61.88	61.65
Solyc01g079680.2.1	Tomato	plastid	61.88	61.09
Os05t0409200-00	Rice	cytosol	11.97	60.75
Bra007730.1-P	Field mustard	cytosol, plastid	59.67	60.56
CDY56462	Canola	cytosol, plastid	59.67	60.56
PGSC0003DMT400023310	Potato	plastid	61.33	60.22
AT3G63130.1	Thale cress	plastid	59.12	60.0
CDX92540	Canola	cytosol	61.51	59.64
CDX93931	Canola	cytosol	36.65	58.88
CDX89174	Canola	plastid	58.01	58.44
Bra040432.1-P	Field mustard	plastid	57.64	58.4
CDY16082	Canola	cytosol	11.97	57.52
CDX93932	Canola	cytosol	11.97	56.52
CDX76683	Canola	mitochondrion	59.67	54.92
CDY02566	Canola	cytosol	19.71	54.04
Bra026911.1-P	Field mustard	cytosol	12.71	52.27
Bra013834.1-P	Field mustard	cytosol	11.79	48.48
GSMUA_Achr8P13660_001	Banana	cytosol	53.59	47.55
Bra020034.1-P	Field mustard	cytosol	19.89	43.9
CDY44911	Canola	cytosol	19.52	42.23
AT3G06000.1	Thale cress	cytosol	16.02	41.23
Zm00001d043604_P002	Maize	cytosol	38.67	39.11
Zm00001d046105_P001	Maize	peroxisome	39.59	36.56
Bra020788.1-P	Field mustard	cytosol, mitochondrion	15.65	36.02
CDY27720	Canola	cytosol, mitochondrion	15.65	34.98
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	10.87	30.89
KXG19681	Sorghum	plastid	18.23	15.05

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	UniProt:C5XXP2	EnsemblPlants:EES05430	ProteinID:EES05430
ProteinID:EES05430.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675
InterPro:IPR038214	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13516	PFAM:PF13943	PANTHER:PTHR24106
PANTHER:PTHR24106:SF248	SMART:SM00368	EnsemblPlantsGene:SORBI_3004G215700	SUPFAM:SSF52047	unigene:Sbi.10875	UniParc:UPI0001A85345
InterPro:WPP_dom	InterPro:WPP_sf	RefSeq:XP_002452454.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:56560203..56563749

Molecular Weight (calculated)

59355.2 Da

IEP (calculated)

4.323

GRAVY (calculated)

-0.345

Length

543 amino acids

Sequence
(BLAST)

001: MDSTQDFQPR TFSIKLWPPS ESTRLMLVEK MTKNLSTESI FSRKYGLLGK QEAHENAKRI EELCFASADE HFKREPDGDG SSAVQLYAKE TSKLMLEVLK
101: KGPSTTAELE TPVADTPLVP ADTVLDISGG KRAFIEADEA KELLSPLTKP GNSYKRICFS NRSFGIGAAN VAGPILEAVK NQLTEVDISD FVAGRPEDEA
201: LDVMRIFSKA LEGSVLRYLN ISDNALGEKG VRAFSELLKS QESLEELYVM NDGISEEAAK ALSELIPATE KLKVLHFHNN MTGDEGAMYI AEMVKRSPNV
301: ESFRCSATRI GSDGGVALSE ALGTCTRLKK LDLRDNLFGV DAGLALSKTL SKLHDLVELY LSDLNLENEG TISIVKALKQ SAPQLEVLEM AGNEINAKAA
401: LDLAECLTAM QSLKKLTLAE NELKDDGAVI IAKSLEDGHT DLKELDVSTN MLQRVGARCF ARAVADKPAF VQLNINGNFI SDEGIDEVKE ILKAGKKSLD
501: VLGSLDENEP DGEPDDEEED EDAEDNEDEL DLKLQSVKVE QDD

Best Arabidopsis Sequence Match ( AT5G19320.2 )
(BLAST)

001: MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED

Arabidopsis Description

RANGAP2RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.