CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69762
CDX73773
CDX77962
CDX89333
CDX90677
CDX94330
CDX97101
CDY17403
CDY28989
CDY32806
CDY67893

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	CDX73773	AT3G50910.1	21798944
AT3G63130.1	CDX77962	AT3G50910.1	21798944
AT3G63130.1	CDX90677	AT3G50910.1	21798944
AT3G63130.1	CDY28989	AT3G50910.1	21798944
AT3G63130.1	CDY67893	AT3G50910.1	21798944
AT3G63130.1	CDX89333	AT4G26455.1	17600715
AT3G63130.1	CDX94330	AT4G26455.1	17600715
AT3G63130.1	CDX89333	AT4G26455.1	20579133
AT3G63130.1	CDX94330	AT4G26455.1	20579133
AT3G63130.1	CDX69762	AT5G11390.1	18591351
AT3G63130.1	CDX97101	AT5G11390.1	18591351
AT3G63130.1	CDY17403	AT5G56210.1	17600715
AT3G63130.1	CDY32806	AT5G56210.1	17600715
AT3G63130.1	CDY17403	AT5G56210.1	20579133
AT3G63130.1	CDY32806	AT5G56210.1	20579133

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040432.1-P	Field mustard	plastid	97.4	97.95
CDX93931	Canola	cytosol	56.4	89.94
CDY56462	Canola	cytosol, plastid	82.19	82.8
AT3G63130.1	Thale cress	plastid	79.96	80.56
CDX93932	Canola	cytosol	16.7	78.26
CDX76683	Canola	mitochondrion	82.0	74.92
Os05t0543200-01	Rice	plasma membrane	59.93	59.38
CDY02566	Canola	cytosol	21.52	58.59
GSMUA_Achr11P...	Banana	cytosol, plastid	59.37	58.39
EES05430	Sorghum	cytosol, nucleus, plastid	58.44	58.01
Zm00001d051112_P001	Maize	plasma membrane	55.1	57.56
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	55.66	57.36
TraesCS1B01G266900.1	Wheat	plastid	58.44	57.17
TraesCS1A01G256200.1	Wheat	cytosol	58.26	57.09
CDX92540	Canola	cytosol	59.0	56.79
TraesCS1D01G255600.1	Wheat	cytosol, plastid	58.44	56.76
CDY16082	Canola	cytosol	11.87	56.64
EES07543	Sorghum	cytosol	26.16	56.18
EES05435	Sorghum	cytosol, plastid	57.7	55.73
TraesCS3D01G394300.1	Wheat	cytosol, plastid	56.77	55.23
TraesCS3B01G433100.1	Wheat	cytosol, plastid	56.59	55.05
HORVU3Hr1G090080.1	Barley	plastid	56.22	54.69
TraesCS3A01G400100.1	Wheat	plastid	56.96	52.12
Zm00001d052426_P001	Maize	cytosol	12.24	48.18
HORVU1Hr1G063300.3	Barley	plastid	57.88	47.78
Zm00001d034691_P001	Maize	cytosol	31.54	44.74
GSMUA_Achr8P13660_001	Banana	cytosol	45.83	40.36
CDY44911	Canola	cytosol	18.18	39.04
Os05t0409200-00	Rice	cytosol	7.05	35.51
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	10.95	30.89
CDY27720	Canola	cytosol, mitochondrion	13.91	30.86
Zm00001d043604_P002	Maize	cytosol	28.39	28.49
Zm00001d046105_P001	Maize	peroxisome	29.31	26.87
CDX93413	Canola	plastid	17.63	15.91
CDY20954	Canola	plastid	17.63	15.78
CDY55048	Canola	plastid	17.44	15.75
CDY20626	Canola	plastid	17.25	15.58

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	EnsemblPlants:CDX89174	ProteinID:CDX89174	ProteinID:CDX89174.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00149333001	InterPro:IPR001611	InterPro:IPR032675
InterPro:IPR038214	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13516	PFAM:PF13943	PANTHER:PTHR24106
PANTHER:PTHR24106:SF248	SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI0004EEAED4	InterPro:WPP_dom	InterPro:WPP_sf
SEG:seg	:	:	:	:	:

Description

BnaA04g00120D

Coordinates

chrLK031857:+:1580228..1581847

Molecular Weight (calculated)

58842.3 Da

IEP (calculated)

4.303

GRAVY (calculated)

-0.362

Length

539 amino acids

Sequence
(BLAST)

001: MDNNSVTTPR VLSVKMWPPS KSTRLMLVDR ITNNLTTPSI FSRKYGLLTP PQAEHDAKRI EDLAFAAANK HFQNEPDGDG TSAVQIYAKE SSKLMLEAIK
101: QGPQEEVQST TTAGGGREDS LFDLSGGRRA FIDDSEARDL LRPLADPTNN SYTKIRFTNR SFGSEAAKVA VSVLSSIKDQ LTEVDLSDFV AGRPEAEALE
201: VMSMFSSALE GSKLRFLDLS DNALGEKGIR AFASLFKSQR DLEELYLMND GISEDAARAV LELLPCTDKI KVLQFHNNMT GDEGAVAIAE IAKNCPCLED
301: FRCSSTRIGS EGGVALAEAL ASCRHLKKLD LRDNMFGVEG GIALAKTLSV LTELTEVYMS YLNLEDEGAE ALSEALIKSA PSLRVLELAG NDITVKSTGK
401: LADCIAAKQC LWKLNLSENE LKDEGSILIA KALDEGHDQL AEVDMSTNMM RRAGARALAG SVLKKQAFKL LNINGNFISE EGVDEVNDMF KDSPEKLGLL
501: DDNDPEGEDF EDEDEEGEEE EDSELEAKLG GLKIKQEEE

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.