Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77962 | Canola | nucleus, plastid | 87.62 | 86.99 |
| CDX90677 | Canola | nucleus | 77.91 | 78.68 |
| CDY28989 | Canola | nucleus | 76.21 | 74.94 |
| AT3G50910.1 | Thale cress | cytosol | 77.43 | 71.36 |
| CDY67893 | Canola | nucleus | 57.04 | 68.12 |
| CDY18608 | Canola | nucleus | 45.63 | 51.79 |
| Zm00001d020667_P001 | Maize | nucleus | 16.02 | 49.62 |
| KRH08190 | Soybean | nucleus | 47.82 | 45.18 |
| KRH76747 | Soybean | plastid | 45.15 | 42.66 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 41.99 | 42.2 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 42.23 | 41.83 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 50.24 | 41.57 |
| KRH28715 | Soybean | cytosol | 41.02 | 41.22 |
| Solyc02g085000.2.1 | Tomato | nucleus | 46.12 | 41.13 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 37.86 | 39.59 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 44.42 | 38.05 |
| TraesCS6A01G272000.1 | Wheat | nucleus | 41.26 | 37.61 |
| TraesCS6D01G252200.1 | Wheat | nucleus | 40.53 | 37.19 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 40.53 | 36.78 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 40.53 | 36.46 |
| Os02t0704600-01 | Rice | nucleus | 40.05 | 36.18 |
| OQU78405 | Sorghum | nucleus | 37.38 | 36.15 |
| Zm00001d038964_P001 | Maize | nucleus | 37.14 | 36.0 |
| OQU85551 | Sorghum | cytosol, plastid | 39.56 | 35.98 |
| Zm00001d051562_P001 | Maize | plastid | 37.62 | 35.15 |
| Zm00001d017768_P006 | Maize | cytosol | 39.81 | 34.53 |
| KRH69884 | Soybean | nucleus | 44.66 | 25.41 |
Protein Annotations
| EnsemblPlants:CDX73773 | EnsemblPlantsGene:GSBRNA2T00109392001 | GO:A0A078CFH9 | ncoils:Coil | PANTHER:PTHR35490 | ProteinID:CDX73773 |
| ProteinID:CDX73773.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEC0C8 | MapMan:35.2 | : |
Description
BnaC08g22300D
Coordinates
chrLK031799:-:2676876..2678908
Molecular Weight (calculated)
45775.2 Da
IEP (calculated)
4.521
GRAVY (calculated)
-0.683
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTFSAIALD RMLEPGAAST SLDTLPTTKP PPISKLENGK GTFTRPQMSP ALYATPDAIP LPNSPSSSSF PPSPYIINHK SRGPRLLKSS SQANVEEGEG
101: VTIGPDVKVS PRRKSTSFSF PISEATEEDY ANGVHALHVG TFSFDGIGNS ELDNAPNNDL EWENNLPEPV TAKADKESES EDFYDPGESA SFTSNTDAGE
201: EGSHRLATPV GEFYDAWDEL SSDSGMQSSV NNNETELREI RLSLLMEIEK RKQTEEALEQ MQTHWQMLRE QLAQVGVFVP IDPTTSTNNM NLSEELRCQL
301: EVARFVSDSL GRGMAKAEVE MEMEAMLETK NFEITRLSDR VHYYEAVNRE MSQRNQEAIE VARRERQKRK KRQRWIWGSI ATTITLGSAA LAWSYIPASR
401: PSSEASQTLK DD
101: VTIGPDVKVS PRRKSTSFSF PISEATEEDY ANGVHALHVG TFSFDGIGNS ELDNAPNNDL EWENNLPEPV TAKADKESES EDFYDPGESA SFTSNTDAGE
201: EGSHRLATPV GEFYDAWDEL SSDSGMQSSV NNNETELREI RLSLLMEIEK RKQTEEALEQ MQTHWQMLRE QLAQVGVFVP IDPTTSTNNM NLSEELRCQL
301: EVARFVSDSL GRGMAKAEVE MEMEAMLETK NFEITRLSDR VHYYEAVNRE MSQRNQEAIE VARRERQKRK KRQRWIWGSI ATTITLGSAA LAWSYIPASR
401: PSSEASQTLK DD
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.