Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72298 | Canola | plastid | 98.57 | 98.57 |
| CDX68011 | Canola | plastid | 97.86 | 97.16 |
| CDX79287 | Canola | plastid | 97.14 | 96.45 |
| CDY22238 | Canola | plastid | 94.29 | 95.65 |
| CDY68385 | Canola | plastid | 94.29 | 95.65 |
| AT1G79040.1 | Thale cress | plastid | 93.57 | 93.57 |
| KRH13645 | Soybean | nucleus, plastid | 76.43 | 77.54 |
| KRH43824 | Soybean | nucleus, plastid | 76.43 | 76.98 |
| VIT_19s0027g00200.t01 | Wine grape | plastid | 74.29 | 74.82 |
| GSMUA_Achr9P30450_001 | Banana | mitochondrion | 69.29 | 73.48 |
| Zm00001d049387_P001 | Maize | plastid | 64.29 | 70.31 |
| EES13497 | Sorghum | plastid | 63.57 | 67.42 |
| Solyc12g017250.1.1 | Tomato | plastid | 64.29 | 65.69 |
| TraesCS6A01G358100.1 | Wheat | plastid | 58.57 | 64.57 |
| TraesCS6D01G340700.1 | Wheat | plastid | 57.86 | 63.78 |
| TraesCS6B01G390600.1 | Wheat | plastid | 57.86 | 63.78 |
| PGSC0003DMT400005956 | Potato | plastid | 54.29 | 63.33 |
| EER95861 | Sorghum | plastid | 60.0 | 61.31 |
| Os07t0147550-00 | Rice | plastid | 60.0 | 60.43 |
| TraesCS6A01G374400.2 | Wheat | plastid | 59.29 | 59.71 |
| Os07t0147500-01 | Rice | plastid | 57.14 | 58.39 |
| TraesCS6D01G358900.1 | Wheat | plastid | 57.14 | 57.14 |
| TraesCS6B01G412100.1 | Wheat | plastid | 56.43 | 56.43 |
| HORVU2Hr1G038940.4 | Barley | plastid | 55.71 | 52.7 |
| HORVU2Hr1G038960.1 | Barley | plastid | 55.0 | 46.39 |
| TraesCS2D01G253900.2 | Wheat | plastid | 55.0 | 44.51 |
| TraesCS2A01G253100.2 | Wheat | plastid | 50.0 | 43.21 |
| HORVU6Hr1G085170.3 | Barley | plastid | 36.43 | 36.43 |
| TraesCS2B01G272900.1 | Wheat | plastid | 32.86 | 17.62 |
Protein Annotations
| MapMan:1.1.1.2.9 | GO:A0A078DGV5 | EnsemblPlants:CDX88501 | ProteinID:CDX88501 | ProteinID:CDX88501.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009523 | GO:GO:0009579 |
| GO:GO:0009654 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0042651 | EnsemblPlantsGene:GSBRNA2T00148051001 |
| PFAM:PF04725 | InterPro:PSII_PsbR | PANTHER:PTHR34369 | PANTHER:PTHR34369:SF2 | TMHMM:TMhelix | UniParc:UPI0004EB301B |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g39450D
Coordinates
chrLK031855:+:1340720..1341963
Molecular Weight (calculated)
14562.5 Da
IEP (calculated)
9.898
GRAVY (calculated)
0.050
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASVMLSSV TLKPAGFTVE KMSARGLPTL TRAPSSFKIV ASGVKKIKTD KPFGVNGSMD LRDGLDASGR KGKGYGVYKF VDKYGANVDG YSPIYNEDEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
Arabidopsis Description
PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.