Factsheet for HORVU6Hr1G085170.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076010.1
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT1G79040.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT1G79040.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT1G79040.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944
AT1G79040.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G358100.1	Wheat	plastid	59.29	65.35
TraesCS6D01G340700.1	Wheat	plastid	58.57	64.57
TraesCS6B01G390600.1	Wheat	plastid	58.57	64.57
Zm00001d049387_P001	Maize	plastid	45.71	50.0
EES13497	Sorghum	plastid	47.14	50.0
VIT_19s0027g00200.t01	Wine grape	plastid	42.14	42.45
KRH43824	Soybean	nucleus, plastid	41.43	41.73
KRH13645	Soybean	nucleus, plastid	40.71	41.3
Solyc07g066310.2.1	Tomato	plastid	37.86	38.41
GSMUA_Achr9P30450_001	Banana	mitochondrion	35.71	37.88
PGSC0003DMT400057257	Potato	plastid	37.14	37.68
CDY68385	Canola	plastid	37.14	37.68
CDY22238	Canola	plastid	37.14	37.68
Bra008392.1-P	Field mustard	plastid	37.14	37.68
CDX79287	Canola	plastid	37.86	37.59
CDY72298	Canola	plastid	37.14	37.14
Bra035087.1-P	Field mustard	plastid	37.14	37.14
Bra003624.1-P	Field mustard	plastid	37.14	36.88
CDX68011	Canola	plastid	37.14	36.88
PGSC0003DMT400005956	Potato	plastid	31.43	36.67
CDX88501	Canola	plastid	36.43	36.43
AT1G79040.1	Thale cress	plastid	35.71	35.71
Solyc12g017250.1.1	Tomato	plastid	32.86	33.58
HORVU2Hr1G038940.4	Barley	plastid	29.29	27.7
HORVU2Hr1G038960.1	Barley	plastid	30.71	25.9

Protein Annotations

EnsemblPlants:HORVU6Hr1G085170.3	EnsemblPlantsGene:HORVU6Hr1G085170	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0042651	InterPro:PSII_PsbR	PANTHER:PTHR34369	PANTHER:PTHR34369:SF2	PFAM:PF04725
SEG:seg	UniParc:UPI000B489127	UniProt:A0A287V0P4	MapMan:1.1.1.2.9	:	:

Description

No Description!

Coordinates

chrchr6H:+:557891214..557893324

Molecular Weight (calculated)

15397.8 Da

IEP (calculated)

11.956

GRAVY (calculated)

-0.545

Length

140 amino acids

Sequence
(BLAST)

001: MAASMITSPI VAPTSLPSLS RRGSSFAVVC SGGKKIKVDK PLGLGGGLTV DIDANGRKVG KKGVYQFVDK YGANVDGYRN DRASYLGRHP RRPARRRRPP
101: RLQHQRSRRL RKHLPVTRGR VRLCAAYCEV YRAAVVGQPS

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.