Factsheet for Solyc07g066310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057257	Potato	plastid	96.38	96.38
GSMUA_Achr9P30450_001	Banana	mitochondrion	73.19	76.52
Zm00001d049387_P001	Maize	plastid	65.94	71.09
Solyc12g017250.1.1	Tomato	plastid	68.84	69.34
EES13497	Sorghum	plastid	64.49	67.42
TraesCS6A01G358100.1	Wheat	plastid	60.14	65.35
TraesCS6B01G390600.1	Wheat	plastid	59.42	64.57
TraesCS6D01G340700.1	Wheat	plastid	59.42	64.57
EER95861	Sorghum	plastid	63.77	64.23
TraesCS6A01G374400.2	Wheat	plastid	61.59	61.15
Os07t0147550-00	Rice	plastid	60.87	60.43
TraesCS6B01G412100.1	Wheat	plastid	60.14	59.29
TraesCS6D01G358900.1	Wheat	plastid	59.42	58.57
Os07t0147500-01	Rice	plastid	57.25	57.66
HORVU2Hr1G038940.4	Barley	plastid	59.42	55.41
HORVU2Hr1G038960.1	Barley	plastid	57.25	47.59
TraesCS2D01G253900.2	Wheat	plastid	57.25	45.66
TraesCS2A01G253100.2	Wheat	plastid	52.9	45.06
HORVU6Hr1G085170.3	Barley	plastid	38.41	37.86
TraesCS2B01G272900.1	Wheat	plastid	35.51	18.77

Protein Annotations

MapMan:1.1.1.2.9	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009654	GO:GO:0009719	GO:GO:0009735	GO:GO:0009987
GO:GO:0010270	GO:GO:0015979	GO:GO:0016020	GO:GO:0016043	GO:GO:0042651	PFAM:PF04725
InterPro:PSII_PsbR	PANTHER:PTHR34369	PANTHER:PTHR34369:SF2	UniProt:Q40163	EnsemblPlantsGene:Solyc07g066310.2	EnsemblPlants:Solyc07g066310.2.1
TMHMM:TMhelix	UniParc:UPI000013273F	EMBL:X95987	EMBL:Z75521	SEG:seg	:

Description

PSBRPhotosystem II 10 kDa polypeptide, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q40163]

Coordinates

chr7:+:67785818..67787519

Molecular Weight (calculated)

14432.3 Da

IEP (calculated)

9.980

GRAVY (calculated)

-0.004

Length

138 amino acids

Sequence
(BLAST)

001: MASTVMSSLS LKPTFTLEKI SVKGLPSLTR SSSSFKVVAS GVKKLKTDKP YGINGSMALR DGVDASGRKP KGKGVYQYVD KYGANVDGYS PIYNTDEWSP
101: SGDVYVGGTT GLAIWAVTLL GILAGGALLV YNTSALAQ

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.