Factsheet for TraesCS6A01G358100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT1G79040.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT1G79040.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT1G79040.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT1G79040.1	TraesCS3D01G274500.1	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G340700.1	Wheat	plastid	99.21	99.21
TraesCS6B01G390600.1	Wheat	plastid	99.21	99.21
Zm00001d049387_P001	Maize	plastid	75.59	75.0
EES13497	Sorghum	plastid	77.95	75.0
VIT_19s0027g00200.t01	Wine grape	plastid	71.65	65.47
KRH43824	Soybean	nucleus, plastid	69.29	63.31
KRH13645	Soybean	nucleus, plastid	67.72	62.32
GSMUA_Achr9P30450_001	Banana	mitochondrion	63.78	61.36
Solyc07g066310.2.1	Tomato	plastid	65.35	60.14
CDX79287	Canola	plastid	66.14	59.57
CDY22238	Canola	plastid	64.57	59.42
CDY68385	Canola	plastid	64.57	59.42
PGSC0003DMT400057257	Potato	plastid	64.57	59.42
HORVU6Hr1G085170.3	Barley	plastid	65.35	59.29
CDY72298	Canola	plastid	65.35	59.29
Bra035087.1-P	Field mustard	plastid	65.35	59.29
CDX68011	Canola	plastid	65.35	58.87
Bra003624.1-P	Field mustard	plastid	65.35	58.87
Bra008392.1-P	Field mustard	plastid	63.78	58.7
CDX88501	Canola	plastid	64.57	58.57
AT1G79040.1	Thale cress	plastid	63.78	57.86
Solyc12g017250.1.1	Tomato	plastid	60.63	56.2
PGSC0003DMT400005956	Potato	plastid	50.39	53.33
TraesCS6A01G374400.2	Wheat	plastid	57.48	52.52
TraesCS2A01G253100.2	Wheat	plastid	54.33	42.59

Protein Annotations

EnsemblPlants:TraesCS6A01G358100.1	EnsemblPlantsGene:TraesCS6A01G358100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0042651	InterPro:PSII_PsbR	PANTHER:PTHR34369	PANTHER:PTHR34369:SF2	PFAM:PF04725
SEG:seg	TMHMM:TMhelix	MapMan:1.1.1.2.9	:	:	:

Description

No Description!

Coordinates

chr6A:+:588230429..588232406

Molecular Weight (calculated)

12984.7 Da

IEP (calculated)

9.381

GRAVY (calculated)

0.165

Length

127 amino acids

Sequence
(BLAST)

001: MAASMITSPI VAPTSLPSLS RRGSSFAVVC SGGKKIKVDK PLGLGGGLTV DIDANGRKVG KKGVYQFVDK YGANVDGYSP IYTPEEWSES GDRYAGGTTG
101: LLIWAVTLAG LLGGGVLLVY NTSALAG

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.