Factsheet for Bra003624.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P
Bra027174.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	Bra030034.1-P	AT1G27300.1	21798944
AT1G79040.1	Bra032817.1-P	AT1G27300.1	21798944
AT1G79040.1	Bra027174.1-P	AT3G16310.1	21798944
AT1G79040.1	Bra012567.1-P	AT4G19030.1	21798944
AT1G79040.1	Bra013361.1-P	AT4G19030.1	21798944
AT1G79040.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G79040.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G79040.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68011	Canola	plastid	100.0	100.0
Bra035087.1-P	Field mustard	plastid	97.16	97.86
Bra008392.1-P	Field mustard	plastid	93.62	95.65
AT1G79040.1	Thale cress	plastid	93.62	94.29
KRH43824	Soybean	nucleus, plastid	78.01	79.14
KRH13645	Soybean	nucleus, plastid	77.31	78.99
VIT_19s0027g00200.t01	Wine grape	plastid	74.47	75.54
GSMUA_Achr9P30450_001	Banana	mitochondrion	68.09	72.73
Zm00001d049387_P001	Maize	plastid	64.54	71.09
EES13497	Sorghum	plastid	63.83	68.18
Solyc12g017250.1.1	Tomato	plastid	65.25	67.15
TraesCS6A01G358100.1	Wheat	plastid	58.87	65.35
PGSC0003DMT400005956	Potato	plastid	55.32	65.0
TraesCS6D01G340700.1	Wheat	plastid	58.16	64.57
TraesCS6B01G390600.1	Wheat	plastid	58.16	64.57
EER95861	Sorghum	plastid	60.99	62.77
Os07t0147550-00	Rice	plastid	60.99	61.87
TraesCS6A01G374400.2	Wheat	plastid	59.57	60.43
Os07t0147500-01	Rice	plastid	56.74	58.39
TraesCS6D01G358900.1	Wheat	plastid	57.45	57.86
TraesCS6B01G412100.1	Wheat	plastid	56.74	57.14
HORVU2Hr1G038940.4	Barley	plastid	56.03	53.38
HORVU2Hr1G038960.1	Barley	plastid	56.03	47.59
TraesCS2D01G253900.2	Wheat	plastid	56.03	45.66
TraesCS2A01G253100.2	Wheat	plastid	51.06	44.44
HORVU6Hr1G085170.3	Barley	plastid	36.88	37.14
TraesCS2B01G272900.1	Wheat	plastid	34.04	18.39

Protein Annotations

MapMan:1.1.1.2.9	EnsemblPlantsGene:Bra003624	EnsemblPlants:Bra003624.1	EnsemblPlants:Bra003624.1-P	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0042651	UniProt:M4CHE1
PFAM:PF04725	InterPro:PSII_PsbR	PANTHER:PTHR34369	PANTHER:PTHR34369:SF2	TMHMM:TMhelix	UniParc:UPI000013273D
SEG:seg	:	:	:	:	:

Description

AT1G79040 (E=1e-064) PSBR | PSBR (photosystem II subunit R)

Coordinates

chrA07:-:14119484..14120108

Molecular Weight (calculated)

14649.6 Da

IEP (calculated)

9.915

GRAVY (calculated)

0.042

Length

141 amino acids

Sequence
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KMSARGLPSL TRASPSSFRI VASGVKKIKT DKPFGVNGSM DLRDGVDASG RKGKGYGVYK FVDKYGANVD GYSPIYNEDE
101: WSASGDVYKG GVTGLAIWAV TLAGILAGGA LLVYNTSALA Q

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.