Factsheet for Os07t0147500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289
plasma membrane: 27800704
extracellular: 28232208

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os02t0509600-01
Os05t0520100-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	Os02t0509600-01	AT1G27300.1	21798944
AT1G79040.1	Os01t0200500-01	AT3G16310.1	21798944
AT1G79040.1	Os05t0520100-00	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G374400.2	Wheat	plastid	83.21	82.01
TraesCS6D01G358900.1	Wheat	plastid	81.02	79.29
TraesCS6B01G412100.1	Wheat	plastid	80.29	78.57
HORVU2Hr1G038940.4	Barley	plastid	80.29	74.32
EER95861	Sorghum	plastid	72.99	72.99
Os07t0147550-00	Rice	plastid	71.53	70.5
VIT_19s0027g00200.t01	Wine grape	plastid	63.5	62.59
KRH43824	Soybean	nucleus, plastid	61.31	60.43
Solyc12g017250.1.1	Tomato	plastid	59.85	59.85
CDY22238	Canola	plastid	59.12	58.7
CDY68385	Canola	plastid	59.12	58.7
KRH13645	Soybean	nucleus, plastid	59.12	58.7
Bra008392.1-P	Field mustard	plastid	58.39	57.97
Solyc07g066310.2.1	Tomato	plastid	57.66	57.25
CDX88501	Canola	plastid	58.39	57.14
CDX79287	Canola	plastid	58.39	56.74
CDX68011	Canola	plastid	58.39	56.74
Bra003624.1-P	Field mustard	plastid	58.39	56.74
PGSC0003DMT400005956	Potato	plastid	49.63	56.67
PGSC0003DMT400057257	Potato	plastid	56.93	56.52
CDY72298	Canola	plastid	57.66	56.43
Bra035087.1-P	Field mustard	plastid	57.66	56.43
AT1G79040.1	Thale cress	plastid	57.66	56.43

Protein Annotations

MapMan:1.1.1.2.9	EntrezGene:4342395	EMBL:AK062172	ProteinID:BAC15975.1	ProteinID:BAD30534.1	ProteinID:BAF20800.1
ProteinID:BAT00057.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0042651	EnsemblPlantsGene:Os07g0147500	EnsemblPlants:Os07t0147500-01	PFAM:PF04725	InterPro:PSII_PsbR
PANTHER:PTHR34369	PANTHER:PTHR34369:SF1	UniProt:Q8H4P7	TMHMM:TMhelix	UniParc:UPI00000AD68A	RefSeq:XP_015647559.1
SEG:seg	:	:	:	:	:

Description

PHOTOSYSTEM II SUBUNITSimilar to Photosystem II 10 kDa polypeptide, chloroplast precursor. (Os07t0147500-01)

Coordinates

chr7:+:2454338..2455636

Molecular Weight (calculated)

14164.3 Da

IEP (calculated)

10.390

GRAVY (calculated)

0.149

Length

137 amino acids

Sequence
(BLAST)

001: MAASVMASLA LKPSASPLLE RSKLRGKGTM ARPSLIIVAK KAKKIQTSQP YGPAGGVVFK EGVDASGRVA KGKGLYQFSN KYGANVDGYS PIYTPEEWSS
101: TGDVYVGGKA GLLLWAITLA GILVGGAILV YNTSALA

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.