Factsheet for HORVU2Hr1G038940.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076010.1
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT1G79040.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT1G79040.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT1G79040.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944
AT1G79040.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G374400.2	Wheat	plastid	84.46	89.93
TraesCS6B01G412100.1	Wheat	plastid	82.43	87.14
TraesCS6D01G358900.1	Wheat	plastid	81.08	85.71
Os07t0147500-01	Rice	plastid	74.32	80.29
EER95861	Sorghum	plastid	68.92	74.45
VIT_19s0027g00200.t01	Wine grape	plastid	58.11	61.87
Solyc07g066310.2.1	Tomato	plastid	55.41	59.42
Solyc12g017250.1.1	Tomato	plastid	54.73	59.12
KRH43824	Soybean	nucleus, plastid	55.41	58.99
PGSC0003DMT400057257	Potato	plastid	54.73	58.7
CDY22238	Canola	plastid	54.05	57.97
CDY68385	Canola	plastid	54.05	57.97
Bra008392.1-P	Field mustard	plastid	53.38	57.25
KRH13645	Soybean	nucleus, plastid	53.38	57.25
Bra003624.1-P	Field mustard	plastid	53.38	56.03
CDX79287	Canola	plastid	53.38	56.03
CDX68011	Canola	plastid	53.38	56.03
HORVU2Hr1G038960.1	Barley	plastid	62.84	56.02
PGSC0003DMT400005956	Potato	plastid	45.27	55.83
CDY72298	Canola	plastid	52.7	55.71
CDX88501	Canola	plastid	52.7	55.71
Bra035087.1-P	Field mustard	plastid	52.7	55.71
AT1G79040.1	Thale cress	plastid	52.7	55.71
HORVU6Hr1G085170.3	Barley	plastid	27.7	29.29

Protein Annotations

MapMan:1.1.1.2.9	UniProt:A0A287HRX5	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0042651	EnsemblPlantsGene:HORVU2Hr1G038940	EnsemblPlants:HORVU2Hr1G038940.4	PFAM:PF04725
InterPro:PSII_PsbR	PANTHER:PTHR34369	PANTHER:PTHR34369:SF1	TMHMM:TMhelix	UniParc:UPI000B47E95B	SEG:seg

Description

No Description!

Coordinates

chrchr2H:+:185335763..185337186

Molecular Weight (calculated)

15276.4 Da

IEP (calculated)

9.606

GRAVY (calculated)

0.111

Length

148 amino acids

Sequence
(BLAST)

001: ERVSECCTNN MSACVMASLA LKPSSSPLLQ RSKLGGVRPS ARPSLVIVAK KAKKVQTAQP YGPGGGVAFK EGVDASGRVA KVSGVYQFAD KYGANVDGYS
101: PIYTPEEWSP SGDVYVGGKT GLFLWAVTLA GILLGGALLV YSTSALAS

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.