Factsheet for VIT_19s0027g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_06s0080g00970.t01
VIT_09s0002g03770.t01
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT1G79040.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT1G79040.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT1G79040.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43824	Soybean	nucleus, plastid	81.3	81.3
KRH13645	Soybean	nucleus, plastid	80.58	81.16
GSMUA_Achr9P30450_001	Banana	mitochondrion	74.1	78.03
Zm00001d049387_P001	Maize	plastid	69.78	75.78
CDY72298	Canola	plastid	76.26	75.71
Bra035087.1-P	Field mustard	plastid	76.26	75.71
CDY22238	Canola	plastid	74.82	75.36
CDY68385	Canola	plastid	74.82	75.36
Bra008392.1-P	Field mustard	plastid	74.1	74.64
CDX79287	Canola	plastid	75.54	74.47
CDX68011	Canola	plastid	75.54	74.47
Bra003624.1-P	Field mustard	plastid	75.54	74.47
CDX88501	Canola	plastid	74.82	74.29
AT1G79040.1	Thale cress	plastid	74.1	73.57
EES13497	Sorghum	plastid	69.78	73.48
TraesCS6A01G358100.1	Wheat	plastid	65.47	71.65
Solyc12g017250.1.1	Tomato	plastid	70.5	71.53
TraesCS6D01G340700.1	Wheat	plastid	64.75	70.87
TraesCS6B01G390600.1	Wheat	plastid	64.75	70.87
EER95861	Sorghum	plastid	69.06	70.07
PGSC0003DMT400005956	Potato	plastid	58.99	68.33
TraesCS6A01G374400.2	Wheat	plastid	66.91	66.91
Os07t0147550-00	Rice	plastid	66.19	66.19
TraesCS6D01G358900.1	Wheat	plastid	65.47	65.0
TraesCS6B01G412100.1	Wheat	plastid	65.47	65.0
Os07t0147500-01	Rice	plastid	62.59	63.5
HORVU2Hr1G038940.4	Barley	plastid	61.87	58.11
HORVU2Hr1G038960.1	Barley	plastid	61.15	51.2
TraesCS2D01G253900.2	Wheat	plastid	62.59	50.29
TraesCS2A01G253100.2	Wheat	plastid	55.4	47.53
HORVU6Hr1G085170.3	Barley	plastid	42.45	42.14
TraesCS2B01G272900.1	Wheat	plastid	40.29	21.46

Protein Annotations

MapMan:1.1.1.2.9	EntrezGene:100243967	wikigene:100243967	UniProt:A5AWT3	EMBL:AM438493	ProteinID:CAN71762
ProteinID:CAN71762.1	ProteinID:CBI21811	ProteinID:CBI21811.3	EMBL:FN595234	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0042651	EntrezGene:LOC100243967
wikigene:LOC100243967	PFAM:PF04725	InterPro:PSII_PsbR	PANTHER:PTHR34369	TIGR:TC53833	TIGR:TC56350
TIGR:TC60152	TIGR:TC69180	TMHMM:TMhelix	UniParc:UPI000151FA99	ArrayExpress:VIT_19s0027g00200	EnsemblPlantsGene:VIT_19s0027g00200
EnsemblPlants:VIT_19s0027g00200.t01	unigene:Vvi.24776	unigene:Vvi.26268	unigene:Vvi.8027	RefSeq:XP_002271791	RefSeq:XP_002271791.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:18708816..18709975

Molecular Weight (calculated)

14366.2 Da

IEP (calculated)

10.079

GRAVY (calculated)

-0.050

Length

139 amino acids

Sequence
(BLAST)

001: MAASVMSSLS LKPSPFSVER RAVRGLPSLA RSSSSFRVEA SGGKKIKTDK PYGIGGGMKL SDGLDASGRK GKGKGVYQFV DKYGANVDGY SPIYSPDEWS
101: PGGDVYVGGT TGLLIWAVTL AGLLLGGALL VYNTSALAQ

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.