Factsheet for GSMUA_Achr9P30450_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P08270_001
GSMUA_Achr4P10230_001
GSMUA_Achr4P15460_001
GSMUA_Achr6P14800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79040.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT1G79040.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT1G79040.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944
AT1G79040.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13645	Soybean	nucleus, plastid	79.55	76.09
KRH43824	Soybean	nucleus, plastid	79.55	75.54
VIT_19s0027g00200.t01	Wine grape	plastid	78.03	74.1
Solyc07g066310.2.1	Tomato	plastid	76.52	73.19
PGSC0003DMT400057257	Potato	plastid	76.52	73.19
Zm00001d049387_P001	Maize	plastid	70.45	72.66
EES13497	Sorghum	plastid	69.7	69.7
CDY22238	Canola	plastid	72.73	69.57
CDY68385	Canola	plastid	72.73	69.57
CDX79287	Canola	plastid	74.24	69.5
AT1G79040.1	Thale cress	plastid	73.48	69.29
Bra035087.1-P	Field mustard	plastid	73.48	69.29
CDX88501	Canola	plastid	73.48	69.29
CDY72298	Canola	plastid	73.48	69.29
Bra008392.1-P	Field mustard	plastid	71.97	68.84
Bra003624.1-P	Field mustard	plastid	72.73	68.09
CDX68011	Canola	plastid	72.73	68.09
Solyc12g017250.1.1	Tomato	plastid	66.67	64.23
TraesCS6A01G358100.1	Wheat	plastid	61.36	63.78
TraesCS6B01G390600.1	Wheat	plastid	60.61	62.99
TraesCS6D01G340700.1	Wheat	plastid	60.61	62.99
PGSC0003DMT400005956	Potato	plastid	56.82	62.5
HORVU6Hr1G085170.3	Barley	plastid	37.88	35.71

Protein Annotations

MapMan:1.1.1.2.9	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009654	GO:GO:0009719	GO:GO:0009735	GO:GO:0009987
GO:GO:0010270	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0042651
EnsemblPlantsGene:GSMUA_Achr9G30450_001	EnsemblPlants:GSMUA_Achr9P30450_001	EnsemblPlants:GSMUA_Achr9T30450_001	UniProt:M0U4V2	PFAM:PF04725	InterPro:PSII_PsbR
PANTHER:PTHR34369	PANTHER:PTHR34369:SF2	TMHMM:TMhelix	UniParc:UPI00029667AD	SEG:seg	:

Description

Photosystem II 10 kDa polypeptide, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G30450_001]

Coordinates

chr9:-:33706939..33708338

Molecular Weight (calculated)

13712.4 Da

IEP (calculated)

9.916

GRAVY (calculated)

-0.142

Length

132 amino acids

Sequence
(BLAST)

001: MSSLALKPAP FLGRPQAKGL PSLVRPSSSF KIQASGKKIK TDKPYGINGG MDLPDGLDAS GRKGKGKGVY QFVDKYGANV DGYSPIYDTN DWSPSGDVYV
101: GGTTGLLIWA VTLAGLLAGG ALLVYNTSAL SQ

Best Arabidopsis Sequence Match ( AT1G79040.1 )
(BLAST)

001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ

Arabidopsis Description

PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.