Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G253900.2 | Wheat | plastid | 37.16 | 56.07 |
| Os07t0147550-00 | Rice | plastid | 29.5 | 55.4 |
| HORVU2Hr1G038960.1 | Barley | plastid | 33.72 | 53.01 |
| EER95861 | Sorghum | plastid | 27.59 | 52.55 |
| TraesCS6B01G412100.1 | Wheat | plastid | 26.05 | 48.57 |
| TraesCS2A01G253100.2 | Wheat | plastid | 26.05 | 41.98 |
| KRH13645 | Soybean | nucleus, plastid | 21.84 | 41.3 |
| PGSC0003DMT400005956 | Potato | plastid | 18.77 | 40.83 |
| VIT_19s0027g00200.t01 | Wine grape | plastid | 21.46 | 40.29 |
| KRH43824 | Soybean | nucleus, plastid | 21.46 | 40.29 |
| Solyc12g017250.1.1 | Tomato | plastid | 19.16 | 36.5 |
| Solyc07g066310.2.1 | Tomato | plastid | 18.77 | 35.51 |
| PGSC0003DMT400057257 | Potato | plastid | 18.39 | 34.78 |
| CDX68011 | Canola | plastid | 18.39 | 34.04 |
| Bra003624.1-P | Field mustard | plastid | 18.39 | 34.04 |
| CDY68385 | Canola | plastid | 17.62 | 33.33 |
| CDY22238 | Canola | plastid | 17.62 | 33.33 |
| CDX79287 | Canola | plastid | 18.01 | 33.33 |
| Bra008392.1-P | Field mustard | plastid | 17.62 | 33.33 |
| TraesCS6B01G390600.1 | Wheat | plastid | 16.09 | 33.07 |
| CDY72298 | Canola | plastid | 17.62 | 32.86 |
| CDX88501 | Canola | plastid | 17.62 | 32.86 |
| Bra035087.1-P | Field mustard | plastid | 17.62 | 32.86 |
| AT1G79040.1 | Thale cress | plastid | 17.24 | 32.14 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G272900.1 | EnsemblPlantsGene:TraesCS2B01G272900 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009523 | GO:GO:0009579 | GO:GO:0009654 | GO:GO:0009987 | GO:GO:0015979 |
| GO:GO:0016020 | GO:GO:0042651 | InterPro:PSII_PsbR | PANTHER:PTHR34369 | PANTHER:PTHR34369:SF1 | PFAM:PF04725 |
| TMHMM:TMhelix | MapMan:1.1.1.2.9 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:374207787..374209500
Molecular Weight (calculated)
29217.5 Da
IEP (calculated)
10.214
GRAVY (calculated)
-0.225
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MHISVREDGS RTLRTIRSRP RCFLQNLSSS VGHVKNNDWS HGSNPLAYWH QTTTDTCQTK LNHLLLHPTC FLVFKASIAH DLAKQIRLAA KKEERELTVI
101: RMATSIMASM ALKSSPSPFS GQSQLQRIQP SARSSSFRVM SKKAKKVQTS QPFGPGGGLE LKDGVDASGR LAKGKGVYQF ASKYGANVDG AAQYITQKNG
201: LQVVTTMREE RHGCCSGWLL LLEFCWVVLC LFTILVLWLL EAWYRKPDYV PCKDLHHLGI L
101: RMATSIMASM ALKSSPSPFS GQSQLQRIQP SARSSSFRVM SKKAKKVQTS QPFGPGGGLE LKDGVDASGR LAKGKGVYQF ASKYGANVDG AAQYITQKNG
201: LQVVTTMREE RHGCCSGWLL LLEFCWVVLC LFTILVLWLL EAWYRKPDYV PCKDLHHLGI L
001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
Arabidopsis Description
PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.