Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0200500-01 | |
| Os02t0509600-01 | |
| Os05t0520100-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79040.1 | Os02t0509600-01 | AT1G27300.1 | 21798944 |
| AT1G79040.1 | Os01t0200500-01 | AT3G16310.1 | 21798944 |
| AT1G79040.1 | Os05t0520100-00 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95861 | Sorghum | plastid | 82.73 | 83.94 |
| Os07t0147500-01 | Rice | plastid | 70.5 | 71.53 |
| VIT_19s0027g00200.t01 | Wine grape | plastid | 66.19 | 66.19 |
| TraesCS2D01G253900.2 | Wheat | plastid | 81.3 | 65.32 |
| HORVU2Hr1G038960.1 | Barley | plastid | 77.7 | 65.06 |
| KRH43824 | Soybean | nucleus, plastid | 63.31 | 63.31 |
| KRH13645 | Soybean | nucleus, plastid | 62.59 | 63.04 |
| CDY22238 | Canola | plastid | 61.15 | 61.59 |
| CDY68385 | Canola | plastid | 61.15 | 61.59 |
| Bra008392.1-P | Field mustard | plastid | 61.15 | 61.59 |
| Solyc12g017250.1.1 | Tomato | plastid | 60.43 | 61.31 |
| Bra003624.1-P | Field mustard | plastid | 61.87 | 60.99 |
| CDX68011 | Canola | plastid | 61.87 | 60.99 |
| Solyc07g066310.2.1 | Tomato | plastid | 60.43 | 60.87 |
| PGSC0003DMT400057257 | Potato | plastid | 60.43 | 60.87 |
| CDX79287 | Canola | plastid | 61.15 | 60.28 |
| Bra035087.1-P | Field mustard | plastid | 60.43 | 60.0 |
| AT1G79040.1 | Thale cress | plastid | 60.43 | 60.0 |
| CDY72298 | Canola | plastid | 60.43 | 60.0 |
| CDX88501 | Canola | plastid | 60.43 | 60.0 |
| PGSC0003DMT400005956 | Potato | plastid | 51.08 | 59.17 |
| TraesCS2A01G253100.2 | Wheat | plastid | 66.91 | 57.41 |
| TraesCS2B01G272900.1 | Wheat | plastid | 55.4 | 29.5 |
Protein Annotations
| MapMan:1.1.1.2.9 | EntrezGene:107276047 | UniProt:B9FVH9 | ProteinID:BAT00058.1 | ProteinID:EEE66566.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009523 | GO:GO:0009579 |
| GO:GO:0009654 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0042651 |
| EnsemblPlantsGene:Os07g0147550 | EnsemblPlants:Os07t0147550-00 | PFAM:PF04725 | InterPro:PSII_PsbR | PANTHER:PTHR34369 | PANTHER:PTHR34369:SF1 |
| TMHMM:TMhelix | UniParc:UPI00019346D2 | RefSeq:XP_015647558.1 | : | : | : |
Description
PSII subunit PsbR2, photosystem II subunit PsbR2Similar to Photosystem II 10 kDa polypeptide, chloroplast. (Os07t0147550-00)
Coordinates
chr7:+:2456969..2458136
Molecular Weight (calculated)
14550.6 Da
IEP (calculated)
10.290
GRAVY (calculated)
-0.096
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASVMASCA LKPSPSPFLE QTRIRAIQPS SRPSLFRVMA KKAKKIQTSQ PFGPGGGPNL KDGVDASGRP IKGKGVYQFA SKYGANVDGY SPIYNPEEWS
101: PSGDVYTGGK TGLLLWAVTL SGILLAGALL VYNTSALAS
101: PSGDVYTGGK TGLLLWAVTL SGILLAGALL VYNTSALAS
001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
Arabidopsis Description
PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.