CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, golgi

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69762
CDX89174
CDX89333
CDX92540
CDX93931
CDX93932
CDX94330
CDX97101
CDY02566
CDY06758
CDY16082
CDY17041
CDY17403
CDY32806
CDY47600
CDY66769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56210.1	CDY06758	AT1G47200.1	17600715
AT5G56210.1	CDY17041	AT1G47200.1	17600715
AT5G56210.1	CDY47600	AT1G47200.1	17600715
AT5G56210.1	CDY66769	AT1G47200.1	17600715
AT5G56210.1	CDX89174	AT3G63130.1	17600715
AT5G56210.1	CDX93931	AT3G63130.1	17600715
AT5G56210.1	CDX93932	AT3G63130.1	17600715
AT5G56210.1	CDX89174	AT3G63130.1	20579133
AT5G56210.1	CDX93931	AT3G63130.1	20579133
AT5G56210.1	CDX93932	AT3G63130.1	20579133
AT5G56210.1	CDX89333	AT4G26455.1	17600715
AT5G56210.1	CDX94330	AT4G26455.1	17600715
AT5G56210.1	CDX69762	AT5G11390.1	18591351
AT5G56210.1	CDX97101	AT5G11390.1	18591351
AT5G56210.1	CDX92540	AT5G19320.1	17600715
AT5G56210.1	CDY02566	AT5G19320.1	17600715
AT5G56210.1	CDY16082	AT5G19320.1	17600715
AT5G56210.1	CDY06758	AT5G43070.1	17600715
AT5G56210.1	CDY17041	AT5G43070.1	17600715
AT5G56210.1	CDY47600	AT5G43070.1	17600715
AT5G56210.1	CDY66769	AT5G43070.1	17600715
AT5G56210.1	CDY17403	AT5G56210.1	17600715
AT5G56210.1	CDY32806	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17403	Canola	nucleus	89.25	90.22
AT5G56210.1	Thale cress	nucleus	55.56	30.45
Solyc07g066170.2.1	Tomato	nucleus	30.47	25.37
TraesCS2B01G351300.1	Wheat	cytosol, golgi, nucleus	24.73	23.15
CDX89333	Canola	nucleus	37.63	21.21
CDX94330	Canola	nucleus	37.28	21.18
Zm00001d003334_P001	Maize	cytosol, nucleus, plastid	23.3	21.1
Os04t0471300-01	Rice	cytosol, golgi, nucleus	22.58	20.86
CDY24192	Canola	plastid	21.51	19.8
VIT_19s0015g01790.t01	Wine grape	nucleus	34.77	15.8
OQU81760	Sorghum	nucleus	24.01	15.73
CDY43354	Canola	cytosol, golgi, nucleus	21.86	15.29
CDX75706	Canola	cytosol, golgi, nucleus	22.22	14.76
Zm00001d020879_P001	Maize	cytosol, golgi, nucleus, plastid	20.79	14.46
HORVU2Hr1G081800.3	Barley	cytosol, nucleus	23.66	14.29
PGSC0003DMT400056956	Potato	nucleus	30.11	14.05
KRH62532	Soybean	endoplasmic reticulum	29.39	14.02
KRH56393	Soybean	cytosol	29.39	13.97
TraesCS2A01G331000.1	Wheat	cytosol	25.45	13.92
TraesCS2D01G332000.1	Wheat	cytosol	25.09	13.73
PGSC0003DMT400022426	Potato	nucleus	28.32	13.48
Zm00001d025667_P001	Maize	cytosol	23.3	13.32
CDX82542	Canola	plastid	21.15	13.32
GSMUA_Achr10P...	Banana	cytosol	24.01	13.29
Zm00001d005997_P002	Maize	plastid	24.73	12.83
EER96942	Sorghum	cytosol, golgi, nucleus, plastid	24.73	12.73
EES14314	Sorghum	nucleus	21.86	12.06
GSMUA_Achr4P01630_001	Banana	cytosol, golgi, nucleus	24.37	11.43
Os08t0497900-01	Rice	nucleus	18.64	11.26
TraesCS5D01G265600.1	Wheat	nucleus	22.22	11.23
TraesCS5A01G257000.1	Wheat	cytosol, golgi, nucleus, plastid	21.86	11.19
GSMUA_Achr3P04120_001	Banana	nucleus	23.66	11.11
TraesCS5B01G256500.1	Wheat	cytosol, golgi, nucleus, plastid	21.51	10.99
HORVU5Hr1G071910.1	Barley	nucleus	21.15	10.77
Os09t0481300-01	Rice	nucleus	20.07	10.63
TraesCS7D01G238200.1	Wheat	cytosol	19.71	10.24
TraesCS7A01G240200.1	Wheat	cytosol	19.35	9.93
TraesCS7B01G135800.1	Wheat	cytosol, golgi, nucleus	19.0	9.85
HORVU7Hr1G048940.3	Barley	cytosol	18.28	8.93

Protein Annotations

EnsemblPlants:CDY32806	EnsemblPlantsGene:GSBRNA2T00052884001	GO:A0A078H4L5	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR34562	PANTHER:PTHR34562:SF1	ProteinID:CDY32806	ProteinID:CDY32806.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EEB0D4	UniProt:A0A078H4L5	MapMan:20.4.2.1.2	:	:

Description

BnaA10g10430DBnaA10g10430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4L5]

Coordinates

chrLK032299:+:437175..438922

Molecular Weight (calculated)

31390.8 Da

IEP (calculated)

4.599

GRAVY (calculated)

-0.573

Length

279 amino acids

Sequence
(BLAST)

001: MDYNEENSDD HEARASTESV EESPSEIKNN GSSNSLDALT EAFNSYHNLQ QVLEKELHKF QELGKEESIS LLHGGSESSS CIHSGHDQAV ESSSSRWSGS
101: DNTGEKRLTC LDSEVLNLVK NVKHLEIKLE ETKRVLDVKE SQIRDLESTL SVSGQGTEME IGIEDIFQQK IEAEIEHLTF SRSVENLKRK IRLIEEEKAL
201: AEAHETLSKL EEAKTKAENL KNQALDLQDH CVDIKEIQEV KSFKKRVVKT TSCLLLQLGL LFILFNVLLV PESETVVPT

Best Arabidopsis Sequence Match ( AT5G56210.1 )
(BLAST)

001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT

Arabidopsis Description

WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.