Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17041 | Canola | nucleus | 94.35 | 96.53 |
| CDY66769 | Canola | nucleus | 66.67 | 68.21 |
| CDY06758 | Canola | nucleus | 62.15 | 66.27 |
| AT1G47200.1 | Thale cress | nucleus | 59.89 | 58.89 |
| KRH15424 | Soybean | nucleus, plastid | 37.85 | 54.47 |
| AT5G43070.1 | Thale cress | cytosol | 46.33 | 52.9 |
| KRH05617 | Soybean | nucleus | 38.42 | 50.37 |
| GSMUA_Achr9P09500_001 | Banana | cytosol | 35.59 | 49.61 |
| PGSC0003DMT400008558 | Potato | nucleus | 40.11 | 46.71 |
| Solyc04g078380.1.1 | Tomato | plastid | 39.55 | 46.05 |
| KRH52049 | Soybean | endoplasmic reticulum | 41.81 | 45.96 |
| KRH61362 | Soybean | endoplasmic reticulum | 40.68 | 44.72 |
| VIT_18s0001g09670.t01 | Wine grape | nucleus | 37.29 | 40.49 |
| AT5G27940.1 | Thale cress | nucleus | 34.46 | 38.85 |
| TraesCS4B01G252900.1 | Wheat | cytosol | 27.68 | 37.12 |
| TraesCS4A01G051500.1 | Wheat | cytosol | 27.68 | 36.57 |
| TraesCS4D01G253000.1 | Wheat | cytosol | 27.68 | 36.57 |
| KXG39905 | Sorghum | cytosol | 28.81 | 36.17 |
| Zm00001d048123_P001 | Maize | cytosol | 28.81 | 35.92 |
| HORVU4Hr1G069210.1 | Barley | cytosol | 27.68 | 35.51 |
| Zm00001d028043_P001 | Maize | mitochondrion | 28.81 | 35.42 |
| Os03t0209000-01 | Rice | cytosol | 30.51 | 34.84 |
| GSMUA_Achr4P14260_001 | Banana | cytosol | 32.2 | 32.57 |
| TraesCS2B01G210200.1 | Wheat | nucleus | 29.94 | 32.32 |
| TraesCS2D01G191500.1 | Wheat | nucleus | 29.94 | 32.32 |
| Zm00001d022025_P001 | Maize | extracellular, mitochondrion | 29.94 | 31.93 |
| EER97479 | Sorghum | nucleus | 31.07 | 31.79 |
| Os10t0337700-01 | Rice | plastid | 24.86 | 31.43 |
| Zm00001d006756_P001 | Maize | mitochondrion | 29.94 | 30.46 |
| TraesCS2A01G183600.1 | Wheat | nucleus | 27.68 | 29.7 |
| HORVU2Hr1G034580.1 | Barley | cytosol, nucleus | 29.38 | 24.76 |
Protein Annotations
| EnsemblPlants:CDY47600 | EnsemblPlantsGene:GSBRNA2T00087719001 | Gene3D:1.10.246.200 | InterPro:IPR038214 | InterPro:WPP_dom | InterPro:WPP_sf |
| PANTHER:PTHR34362 | PANTHER:PTHR34362:SF1 | PFAM:PF13943 | ProteinID:CDY47600 | ProteinID:CDY47600.1 | UniParc:UPI0004EEFF65 |
| UniProt:A0A078I9J7 | MapMan:35.1 | : | : | : | : |
Description
BnaC08g04700DBnaC08g04700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9J7]
Coordinates
chrLK032724:+:119738..120559
Molecular Weight (calculated)
18950.6 Da
IEP (calculated)
4.257
GRAVY (calculated)
-0.788
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETAETINT TVSPPHSESE GSTTLPATTP DQTSDETSKA ADLKKEESVA ETKPGGGNSL RIWPPTQKTR DAVLKRLIET LSTESILSKR YGTLNSDEAS
101: AVAKSIEEEA YGVASNAVSD DDDGIKILEV YSKEISKRML ETVKDRSAAA ANKEAVEDVK TEATKDDEAP ESEKSEA
101: AVAKSIEEEA YGVASNAVSD DDDGIKILEV YSKEISKRML ETVKDRSAAA ANKEAVEDVK TEATKDDEAP ESEKSEA
001: MAETAETINT TISSPPPESE SSTTISAMTD PTSQEAASKD TDLTKEAESE KKPGGISLRI WPPTQKTRDA VLNRLIETLS TESILSKRYG TLKSDDATTV
101: AKLIEEEAYG VASNAVSSDD DGIKILELYS KEISKRMLES VKARSNASVG NGSVEDANTD ASEVSKDDAG PASEEEKSEA
101: AKLIEEEAYG VASNAVSSDD DGIKILELYS KEISKRMLES VKARSNASVG NGSVEDANTD ASEVSKDDAG PASEEEKSEA
Arabidopsis Description
WPP2WPP domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.