Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G252900.1 | Wheat | cytosol | 83.33 | 87.12 |
| TraesCS4A01G051500.1 | Wheat | cytosol | 82.61 | 85.07 |
| TraesCS4D01G253000.1 | Wheat | cytosol | 81.88 | 84.33 |
| KXG39905 | Sorghum | cytosol | 76.09 | 74.47 |
| Zm00001d028043_P001 | Maize | mitochondrion | 77.54 | 74.31 |
| Zm00001d048123_P001 | Maize | cytosol | 73.91 | 71.83 |
| Os03t0209000-01 | Rice | cytosol | 76.09 | 67.74 |
| KRH15424 | Soybean | nucleus, plastid | 41.3 | 46.34 |
| KRH05617 | Soybean | nucleus | 43.48 | 44.44 |
| GSMUA_Achr9P09500_001 | Banana | cytosol | 38.41 | 41.73 |
| PGSC0003DMT400008558 | Potato | nucleus | 43.48 | 39.47 |
| Solyc04g078380.1.1 | Tomato | plastid | 42.75 | 38.82 |
| KRH52049 | Soybean | endoplasmic reticulum | 43.48 | 37.27 |
| KRH61362 | Soybean | endoplasmic reticulum | 43.48 | 37.27 |
| VIT_18s0001g09670.t01 | Wine grape | nucleus | 39.86 | 33.74 |
| HORVU2Hr1G034580.1 | Barley | cytosol, nucleus | 50.72 | 33.33 |
| GSMUA_Achr4P14260_001 | Banana | cytosol | 39.86 | 31.43 |
| Bra040752.1-P | Field mustard | nucleus | 36.23 | 30.12 |
| CDY06758 | Canola | nucleus | 36.23 | 30.12 |
| CDY17041 | Canola | nucleus | 36.96 | 29.48 |
| Bra040794.1-P | Field mustard | nucleus | 36.96 | 29.48 |
| AT1G47200.1 | Thale cress | nucleus | 37.68 | 28.89 |
| CDY66769 | Canola | nucleus | 35.51 | 28.32 |
| AT5G43070.1 | Thale cress | cytosol | 31.16 | 27.74 |
| CDY47600 | Canola | nucleus | 35.51 | 27.68 |
| AT5G27940.1 | Thale cress | nucleus | 24.64 | 21.66 |
Protein Annotations
| EMBL:AK354285 | EMBL:AK371880 | EnsemblPlants:HORVU4Hr1G069210.1 | EnsemblPlantsGene:HORVU4Hr1G069210 | Gene3D:1.10.246.200 | InterPro:IPR038214 |
| InterPro:WPP_dom | InterPro:WPP_sf | PANTHER:PTHR34362 | PFAM:PF13943 | SEG:seg | UniParc:UPI000200475E |
| UniProt:F2CRN3 | MapMan:35.2 | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CRN3]
Coordinates
chrchr4H:+:569061280..569063137
Molecular Weight (calculated)
14137.4 Da
IEP (calculated)
4.240
GRAVY (calculated)
-0.120
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPDELPEAA AAAGAAAGDE AAPFSFSIWP PTQRTRDAVV RRLVDTLAGD TLLCKRYGAV PAADAEPAAR AIEAEAFDAA AVAGGAAASV EEGIEALQLY
101: SKEVSRRLLD FVKSRSAAAK AEPPSEAPPA VKEETSEA
101: SKEVSRRLLD FVKSRSAAAK AEPPSEAPPA VKEETSEA
001: MAETAETINT TISSPPPESE SSTTISAMTD PTSQEAASKD TDLTKEAESE KKPGGISLRI WPPTQKTRDA VLNRLIETLS TESILSKRYG TLKSDDATTV
101: AKLIEEEAYG VASNAVSSDD DGIKILELYS KEISKRMLES VKARSNASVG NGSVEDANTD ASEVSKDDAG PASEEEKSEA
101: AKLIEEEAYG VASNAVSSDD DGIKILELYS KEISKRMLES VKARSNASVG NGSVEDANTD ASEVSKDDAG PASEEEKSEA
Arabidopsis Description
WPP2WPP domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.