Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002835.1-P | |
| Bra004347.1-P | |
| Bra005056.1-P | |
| Bra008966.1-P | |
| Bra026434.1-P | |
| Bra038339.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06758 | Canola | nucleus | 100.0 | 100.0 |
| AT1G47200.1 | Thale cress | nucleus | 70.48 | 65.0 |
| Bra040794.1-P | Field mustard | nucleus | 65.06 | 62.43 |
| AT5G43070.1 | Thale cress | cytosol | 51.2 | 54.84 |
| KRH15424 | Soybean | nucleus, plastid | 39.76 | 53.66 |
| GSMUA_Achr9P09500_001 | Banana | cytosol | 39.16 | 51.18 |
| KRH05617 | Soybean | nucleus | 40.36 | 49.63 |
| Solyc04g078380.1.1 | Tomato | plastid | 43.98 | 48.03 |
| PGSC0003DMT400008558 | Potato | nucleus | 43.98 | 48.03 |
| KRH52049 | Soybean | endoplasmic reticulum | 41.57 | 42.86 |
| KRH61362 | Soybean | endoplasmic reticulum | 40.36 | 41.61 |
| AT5G27940.1 | Thale cress | nucleus | 36.75 | 38.85 |
| VIT_18s0001g09670.t01 | Wine grape | nucleus | 37.95 | 38.65 |
| Zm00001d048123_P001 | Maize | cytosol | 31.33 | 36.62 |
| TraesCS4B01G252900.1 | Wheat | cytosol | 28.92 | 36.36 |
| HORVU4Hr1G069210.1 | Barley | cytosol | 30.12 | 36.23 |
| KXG39905 | Sorghum | cytosol | 30.12 | 35.46 |
| TraesCS4A01G051500.1 | Wheat | cytosol | 28.31 | 35.07 |
| TraesCS4D01G253000.1 | Wheat | cytosol | 28.31 | 35.07 |
| Zm00001d028043_P001 | Maize | mitochondrion | 30.12 | 34.72 |
| Os03t0209000-01 | Rice | cytosol | 31.93 | 34.19 |
| GSMUA_Achr4P14260_001 | Banana | cytosol | 34.34 | 32.57 |
| Zm00001d022025_P001 | Maize | extracellular, mitochondrion | 30.12 | 30.12 |
| Os10t0337700-01 | Rice | plastid | 25.3 | 30.0 |
| TraesCS2B01G210200.1 | Wheat | nucleus | 28.92 | 29.27 |
| TraesCS2D01G191500.1 | Wheat | nucleus | 28.92 | 29.27 |
| EER97479 | Sorghum | nucleus | 30.12 | 28.9 |
| TraesCS2A01G183600.1 | Wheat | nucleus | 28.31 | 28.48 |
| Zm00001d006756_P001 | Maize | mitochondrion | 29.52 | 28.16 |
| HORVU2Hr1G034580.1 | Barley | cytosol, nucleus | 29.52 | 23.33 |
Protein Annotations
Description
AT1G47200 (E=3e-054) WPP2 | WPP2
Coordinates
chrScaffold000249:-:35596..36096
Molecular Weight (calculated)
17758.2 Da
IEP (calculated)
4.167
GRAVY (calculated)
-0.682
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETAETINT TVSHPQPESE DSTTLSATAD QTSDETSKAA DLKKEESVAE TKPGSISLRI WPPTQKTRDA VLNRLIETLS TESILSKRYG TLNSDEASAV
101: AKSIEEEAYG VASSAVSDDD DGIKILEVYS KEISKRMLET VKDRSAATAG NGNNEAVEDA TDATKE
101: AKSIEEEAYG VASSAVSDDD DGIKILEVYS KEISKRMLET VKDRSAATAG NGNNEAVEDA TDATKE
001: MAETAETINT TISSPPPESE SSTTISAMTD PTSQEAASKD TDLTKEAESE KKPGGISLRI WPPTQKTRDA VLNRLIETLS TESILSKRYG TLKSDDATTV
101: AKLIEEEAYG VASNAVSSDD DGIKILELYS KEISKRMLES VKARSNASVG NGSVEDANTD ASEVSKDDAG PASEEEKSEA
101: AKLIEEEAYG VASNAVSSDD DGIKILELYS KEISKRMLES VKARSNASVG NGSVEDANTD ASEVSKDDAG PASEEEKSEA
Arabidopsis Description
WPP2WPP domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.