Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH15424 | Soybean | nucleus, plastid | 44.88 | 46.34 |
| KRH05617 | Soybean | nucleus | 47.24 | 44.44 |
| TraesCS4B01G252900.1 | Wheat | cytosol | 40.94 | 39.39 |
| Bra040752.1-P | Field mustard | nucleus | 51.18 | 39.16 |
| CDY06758 | Canola | nucleus | 51.18 | 39.16 |
| Solyc04g078380.1.1 | Tomato | plastid | 46.46 | 38.82 |
| PGSC0003DMT400008558 | Potato | nucleus | 46.46 | 38.82 |
| TraesCS4D01G253000.1 | Wheat | cytosol | 40.94 | 38.81 |
| HORVU4Hr1G069210.1 | Barley | cytosol | 41.73 | 38.41 |
| CDY66769 | Canola | nucleus | 51.97 | 38.15 |
| TraesCS4A01G051500.1 | Wheat | cytosol | 39.37 | 37.31 |
| KRH52049 | Soybean | endoplasmic reticulum | 47.24 | 37.27 |
| Zm00001d048123_P001 | Maize | cytosol | 40.94 | 36.62 |
| CDY17041 | Canola | nucleus | 49.61 | 36.42 |
| Zm00001d028043_P001 | Maize | mitochondrion | 40.94 | 36.11 |
| Bra040794.1-P | Field mustard | nucleus | 48.82 | 35.84 |
| CDY47600 | Canola | nucleus | 49.61 | 35.59 |
| VIT_18s0001g09670.t01 | Wine grape | nucleus | 45.67 | 35.58 |
| AT5G43070.1 | Thale cress | cytosol | 43.31 | 35.48 |
| KXG39905 | Sorghum | cytosol | 39.37 | 35.46 |
| TraesCS2A01G183600.1 | Wheat | nucleus | 45.67 | 35.15 |
| GSMUA_Achr4P14260_001 | Banana | cytosol | 48.03 | 34.86 |
| KRH61362 | Soybean | endoplasmic reticulum | 44.09 | 34.78 |
| TraesCS2B01G210200.1 | Wheat | nucleus | 44.88 | 34.76 |
| EER97479 | Sorghum | nucleus | 47.24 | 34.68 |
| Zm00001d022025_P001 | Maize | extracellular, mitochondrion | 44.88 | 34.34 |
| TraesCS2D01G191500.1 | Wheat | nucleus | 44.09 | 34.15 |
| Zm00001d006756_P001 | Maize | mitochondrion | 46.46 | 33.91 |
| AT1G47200.1 | Thale cress | nucleus | 47.24 | 33.33 |
| Os03t0209000-01 | Rice | cytosol | 40.16 | 32.9 |
| Os10t0337700-01 | Rice | plastid | 33.86 | 30.71 |
| AT5G27940.1 | Thale cress | nucleus | 34.65 | 28.03 |
| HORVU2Hr1G034580.1 | Barley | cytosol, nucleus | 45.67 | 27.62 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P09500_001 | EnsemblPlants:GSMUA_Achr9T09500_001 | EnsemblPlantsGene:GSMUA_Achr9G09500_001 | Gene3D:1.10.246.200 | InterPro:IPR038214 | InterPro:WPP_dom |
| InterPro:WPP_sf | PANTHER:PTHR34362 | PFAM:PF13943 | SEG:seg | UniParc:UPI0002954B3A | UniProt:M0TYV9 |
| MapMan:35.2 | : | : | : | : | : |
Description
MFP1 attachment factor 1 (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr9G09500_001]
Coordinates
chr9:-:6183021..6183731
Molecular Weight (calculated)
13050.2 Da
IEP (calculated)
4.736
GRAVY (calculated)
-0.206
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGAAAEAK GEIEKNTAAG GGYSSLVLKI WPPTQRTREA VLHRLVETLT SQSVLSKRYG SLPRDEAAAV AGTIEEEAFS AASAASVGGG ADDDGIEVLN
101: VYSQEISRRM VESAKARAAA SAAAPNS
101: VYSQEISRRM VESAKARAAA SAAAPNS
001: MAETAETINT TISSPPPESE SSTTISAMTD PTSQEAASKD TDLTKEAESE KKPGGISLRI WPPTQKTRDA VLNRLIETLS TESILSKRYG TLKSDDATTV
101: AKLIEEEAYG VASNAVSSDD DGIKILELYS KEISKRMLES VKARSNASVG NGSVEDANTD ASEVSKDDAG PASEEEKSEA
101: AKLIEEEAYG VASNAVSSDD DGIKILELYS KEISKRMLES VKARSNASVG NGSVEDANTD ASEVSKDDAG PASEEEKSEA
Arabidopsis Description
WPP2WPP domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.