Factsheet for Bra008966.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008966.1-P
Bra026434.1-P
Bra026911.1-P
Bra040432.1-P
Bra040752.1-P
Bra040794.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11390.1	Bra040432.1-P	AT3G63130.1	18591351
AT5G11390.1	Bra026434.1-P	AT4G26455.1	18591351
AT5G11390.1	Bra008966.1-P	AT5G11390.1	18591351
AT5G11390.1	Bra026911.1-P	AT5G19320.1	18591351
AT5G11390.1	Bra040752.1-P	AT5G27940.1	18591351
AT5G11390.1	Bra040794.1-P	AT5G27940.1	18591351

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69762	Canola	nucleus	99.09	99.24
AT5G11390.1	Thale cress	cytosol, golgi, nucleus	73.78	68.85
VIT_14s0083g00730.t01	Wine grape	nucleus	43.9	40.34
KRG93747	Soybean	nucleus	33.08	39.45
KRH01441	Soybean	cytosol	37.65	38.0
KRH18315	Soybean	nucleus	32.01	37.7
Solyc02g065660.2.1	Tomato	nucleus, plastid	35.98	37.7
PGSC0003DMT400068312	Potato	cytosol, golgi, nucleus	38.26	36.7
GSMUA_Achr1P19080_001	Banana	nucleus	32.47	35.38
GSMUA_Achr7P06030_001	Banana	cytosol, golgi, nucleus	33.54	33.13
Os05t0241000-01	Rice	nucleus	31.4	30.79
HORVU3Hr1G057330.1	Barley	cytosol	30.79	30.38
TraesCSU01G064900.1	Wheat	cytosol	31.4	30.21
TraesCS7D01G038700.1	Wheat	cytosol	31.25	30.15
TraesCS3D01G166100.1	Wheat	cytosol	29.73	29.82
OQU86053	Sorghum	cytosol, golgi, nucleus	30.03	29.58
TraesCS7A01G042800.1	Wheat	cytosol	30.64	29.56
TraesCS3A01G158400.1	Wheat	cytosol	30.18	29.42
Zm00001d039272_P003	Maize	cytosol	29.27	29.4
KXG21620	Sorghum	cytosol	28.96	29.37
Bra004347.1-P	Field mustard	cytosol	30.03	29.36
Os01t0235350-00	Rice	cytosol	30.79	28.86
HORVU7Hr1G007940.7	Barley	mitochondrion	31.1	28.18
Bra038339.1-P	Field mustard	nucleus	29.57	27.21
Zm00001d010047_P001	Maize	plastid	28.51	24.97

Protein Annotations

EnsemblPlants:Bra008966.1	EnsemblPlants:Bra008966.1-P	EnsemblPlantsGene:Bra008966	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR35705
PANTHER:PTHR35705:SF1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00025442EF	UniProt:M4CXL9	MapMan:20.4.2.2

Description

AT5G11390 (E=3e-138) | unknown protein

Coordinates

chrA10:-:14657197..14659413

Molecular Weight (calculated)

74271.0 Da

IEP (calculated)

4.505

GRAVY (calculated)

-0.672

Length

656 amino acids

Sequence
(BLAST)

001: MEIETEHHRT VSVDDNDSLV PQPSSSKESL LEDINHHHHH PELSTASQVL IKVELDFAFV SEKLVNLSLL TMQLGSREHD FESFASHNKE EEEDDDDLAE
101: KALEFDLLSS FLYSEVKEVE SLVGFLQNEI QNARVTMISP FQDDGDLEGK FHDAEQSLDQ LMDQVVEMKK QSNSFHKLSS GSDELGSWSG GGAAESQTDG
201: EFGDLSAKIK MQTADQQRNV LRMLEKSLAK EMELEKKLSE SRNSEYQLEI KLYSSEQDVL YMEEVIEDAY SRWLEAENSS EVFKGMLKEM SGKLQILKFN
301: LSGSFKRETN LKSELVDKES ALHKLDSSNG RLGDFLMAQT EGLKESLREA EEKLILLSTE NSTLSEKVSS LEEQLNETTD LERVNEDLKE KLASAEEAES
401: KCRKLEEELG SFRAKGYTPE KLESLEKHLR DSDHQLELAV AAVEAGKEKQ SLLYSTVSDM EDVIDDLKSK VSKAENRADY TEDKLITVSE SNADLNEELK
501: FCRGRLKEAE RYLQQAEERK LQTAKDIAQH NKIMKKLVLQ LASERERLHK QITNLSKENR VLMVKLKKVG KTGFTESENI SPKSDQSSLP CHQESKLQAT
601: ITSLTDQEEE EETESTSDIG SVRRLDAGAL GIKHILLAIL VIFMSSMAYL MSQQNI

Best Arabidopsis Sequence Match ( AT5G11390.1 )
(BLAST)

001: METETEHDRT VSVDDNDSLV PEPSSTKESF FEDLSLTGQV MNPQLSSAGE VLTKVELDFA FVSEKLVNLS LLTMQLGTRE NDFESFVSKK EEDEEEPSSN
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM

Arabidopsis Description

WIT1WPP domain-interacting tail-anchored protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7E5]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.