Factsheet for Bra040432.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002835.1-P
Bra008966.1-P
Bra012880.1-P
Bra026434.1-P
Bra036850.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	Bra012880.1-P	AT3G50910.1	21798944
AT3G63130.1	Bra036850.1-P	AT3G50910.1	21798944
AT3G63130.1	Bra026434.1-P	AT4G26455.1	17600715
AT3G63130.1	Bra026434.1-P	AT4G26455.1	20579133
AT3G63130.1	Bra008966.1-P	AT5G11390.1	18591351
AT3G63130.1	Bra002835.1-P	AT5G56210.1	17600715
AT3G63130.1	Bra002835.1-P	AT5G56210.1	20579133

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89174	Canola	plastid	97.95	97.4
Bra007730.1-P	Field mustard	cytosol, plastid	82.46	82.62
AT3G63130.1	Thale cress	plastid	80.41	80.56
Bra013834.1-P	Field mustard	cytosol	19.59	79.55
Os05t0543200-01	Rice	plasma membrane	60.07	59.19
GSMUA_Achr11P...	Banana	cytosol, plastid	59.7	58.39
EES05430	Sorghum	cytosol, nucleus, plastid	58.4	57.64
Zm00001d051112_P001	Maize	plasma membrane	55.22	57.36
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	55.97	57.36
TraesCS1B01G266900.1	Wheat	plastid	58.77	57.17
TraesCS1A01G256200.1	Wheat	cytosol	58.58	57.09
TraesCS1D01G255600.1	Wheat	cytosol, plastid	58.77	56.76
EES07543	Sorghum	cytosol	26.31	56.18
EES05435	Sorghum	cytosol, plastid	58.4	56.09
TraesCS3D01G394300.1	Wheat	cytosol, plastid	57.09	55.23
TraesCS3B01G433100.1	Wheat	cytosol, plastid	56.9	55.05
HORVU3Hr1G090080.1	Barley	plastid	56.53	54.69
Bra026911.1-P	Field mustard	cytosol	13.06	53.03
TraesCS3A01G400100.1	Wheat	plastid	57.28	52.12
Zm00001d052426_P001	Maize	cytosol	12.5	48.91
HORVU1Hr1G063300.3	Barley	plastid	58.21	47.78
Zm00001d034691_P001	Maize	cytosol	31.53	44.47
GSMUA_Achr8P13660_001	Banana	cytosol	45.71	40.03
Bra020034.1-P	Field mustard	cytosol	18.1	39.43
Os05t0409200-00	Rice	cytosol	7.09	35.51
Bra020788.1-P	Field mustard	cytosol, mitochondrion	14.55	33.05
Zm00001d043604_P002	Maize	cytosol	28.36	28.31
Zm00001d046105_P001	Maize	peroxisome	29.29	26.7
Bra019926.1-P	Field mustard	plastid	17.91	16.08
Bra018435.1-P	Field mustard	plastid	17.16	15.38

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra040432	EnsemblPlants:Bra040432.1	EnsemblPlants:Bra040432.1-P
GO:GO:0000911	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005737	GO:GO:0005886	GO:GO:0007049
GO:GO:0008150	GO:GO:0009504	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020
GO:GO:0032153	InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
UniProt:M4FH54	PFAM:PF13516	PFAM:PF13943	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368
SUPFAM:SSF52047	UniParc:UPI0002545256	InterPro:WPP_dom	InterPro:WPP_sf	SEG:seg	:

Description

AT3G63130 (E=2e-222) RANGAP1 | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding

Coordinates

chrA04:+:12323..13933

Molecular Weight (calculated)

58498.0 Da

IEP (calculated)

4.317

GRAVY (calculated)

-0.360

Length

536 amino acids

Sequence
(BLAST)

001: MDNNSVTTPR VLSVKMWPPS KSTRLMLVDR ITNNLTTPSI FSRKYGLLTP PQAEHDAKRI EDLAFASANK HFQNEPDGDG TSAVQIYAKE SSKLMLEAIK
101: QGPQEEVQST TTAGGGREDC LFDLSGGRRA FIDESEARDL LRPLADPNNN SFTKIRFTNR SFGSEAAKVA VSVLSSIKDQ LTEVDLSDFV AGRPEAEALE
201: VMNMFSSALE GSKLRFLDLS DNALGEKGIR AFASLFKSQR DLEELYLMND GISEDAARAV LELLPCTDKI KVLQFHNNMT GDEGAVAIAE IVKNCPCLED
301: FRCSSTRIGS EGGVALAEAL ASCRHLKKLD LRDNMFGVEG GIALAKTLSV LTEVYMSYLN LEDEGAEALS EALIKSAPSL RVLELAGNDI TVKSTGKLAD
401: CIAAKQCLSK LNLSENELKD EGSILIAKAL DEGHDQLAEV DMSTNMMRRA GARALAGSVL KKQAFKLLNI NGNFISEEGV DEVNDMFKDS PEKLGLLDDN
501: DPEGEDFEDE DEEGEEEEDS ELEAKLGGLK IKQEEE

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.