Factsheet for HORVU3Hr1G090080.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G081800.3
HORVU3Hr1G057330.1
HORVU5Hr1G071910.1
HORVU6Hr1G068770.1
HORVU7Hr1G007940.7
HORVU7Hr1G048940.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	HORVU6Hr1G068770.1	AT3G50910.1	21798944
AT3G63130.1	HORVU2Hr1G081800.3	AT4G26455.1	17600715
AT3G63130.1	HORVU5Hr1G071910.1	AT4G26455.1	17600715
AT3G63130.1	HORVU7Hr1G048940.3	AT4G26455.1	17600715
AT3G63130.1	HORVU2Hr1G081800.3	AT4G26455.1	20579133
AT3G63130.1	HORVU5Hr1G071910.1	AT4G26455.1	20579133
AT3G63130.1	HORVU7Hr1G048940.3	AT4G26455.1	20579133
AT3G63130.1	HORVU3Hr1G057330.1	AT5G11390.1	18591351
AT3G63130.1	HORVU7Hr1G007940.7	AT5G11390.1	18591351
AT3G63130.1	HORVU2Hr1G081800.3	AT5G56210.1	17600715
AT3G63130.1	HORVU5Hr1G071910.1	AT5G56210.1	17600715
AT3G63130.1	HORVU7Hr1G048940.3	AT5G56210.1	17600715
AT3G63130.1	HORVU2Hr1G081800.3	AT5G56210.1	20579133
AT3G63130.1	HORVU5Hr1G071910.1	AT5G56210.1	20579133
AT3G63130.1	HORVU7Hr1G048940.3	AT5G56210.1	20579133
AT5G19320.1	HORVU2Hr1G081800.3	AT4G26455.1	17600715
AT5G19320.1	HORVU5Hr1G071910.1	AT4G26455.1	17600715
AT5G19320.1	HORVU7Hr1G048940.3	AT4G26455.1	17600715
AT5G19320.1	HORVU3Hr1G057330.1	AT5G11390.1	18591351
AT5G19320.1	HORVU7Hr1G007940.7	AT5G11390.1	18591351
AT5G19320.1	HORVU2Hr1G081800.3	AT5G56210.1	17600715
AT5G19320.1	HORVU5Hr1G071910.1	AT5G56210.1	17600715
AT5G19320.1	HORVU7Hr1G048940.3	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G394300.1	Wheat	cytosol, plastid	96.03	96.03
TraesCS3B01G433100.1	Wheat	cytosol, plastid	96.03	96.03
TraesCS3A01G400100.1	Wheat	plastid	94.58	88.96
Os05t0543200-01	Rice	plasma membrane	82.13	83.64
EES05430	Sorghum	cytosol, nucleus, plastid	80.51	82.14
Zm00001d051112_P001	Maize	plasma membrane	75.63	81.2
EES05435	Sorghum	cytosol, plastid	79.78	79.21
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	73.83	78.2
EES07543	Sorghum	cytosol	34.66	76.49
HORVU1Hr1G063300.3	Barley	plastid	87.73	74.43
GSMUA_Achr11P...	Banana	cytosol, plastid	65.16	65.88
VIT_07s0104g00520.t01	Wine grape	plastid	64.26	65.8
KRH71426	Soybean	nucleus	61.55	63.98
KRH32020	Soybean	cytosol	61.55	63.86
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	61.55	63.27
Solyc09g065190.1.1	Tomato	plastid	60.47	62.73
PGSC0003DMT400086322	Potato	cytosol	60.47	62.73
Zm00001d052426_P001	Maize	cytosol	15.34	62.04
KRG91256	Soybean	endoplasmic reticulum	59.57	62.03
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	58.66	61.79
KRH35557	Soybean	endoplasmic reticulum, nucleus	59.21	61.54
AT5G19320.1	Thale cress	cytosol	60.11	61.1
Zm00001d034691_P001	Maize	cytosol	40.79	59.47
Solyc01g079680.2.1	Tomato	plastid	59.03	59.45
CDY56462	Canola	cytosol, plastid	57.22	59.25
Bra007730.1-P	Field mustard	cytosol, plastid	57.22	59.25
PGSC0003DMT400023310	Potato	plastid	58.84	58.95
CDX92540	Canola	cytosol	59.39	58.75
AT3G63130.1	Thale cress	plastid	56.5	58.5
CDX93931	Canola	cytosol	34.84	57.1
Bra040432.1-P	Field mustard	plastid	54.69	56.53
CDX89174	Canola	plastid	54.69	56.22
Os05t0409200-00	Rice	cytosol	10.83	56.07
CDY16082	Canola	cytosol	11.37	55.75
CDX76683	Canola	mitochondrion	57.04	53.56
CDY02566	Canola	cytosol	19.13	53.54
CDX93932	Canola	cytosol	11.01	53.04
Bra026911.1-P	Field mustard	cytosol	12.09	50.76
GSMUA_Achr8P13660_001	Banana	cytosol	51.62	46.73
Bra013834.1-P	Field mustard	cytosol	11.01	46.21
Bra020034.1-P	Field mustard	cytosol	20.22	45.53
CDY44911	Canola	cytosol	20.04	44.22
AT3G06000.1	Thale cress	cytosol	14.44	37.91
Zm00001d043604_P002	Maize	cytosol	35.74	36.87
Zm00001d046105_P001	Maize	peroxisome	36.64	34.52
CDY27720	Canola	cytosol, mitochondrion	14.8	33.74
Bra020788.1-P	Field mustard	cytosol, mitochondrion	14.08	33.05
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	10.65	30.89
HORVU7Hr1G039610.2	Barley	cytosol, peroxisome, plastid	16.07	14.06

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:HORVU3Hr1G090080	EnsemblPlants:HORVU3Hr1G090080.1	InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	UniProt:M0X1Z2	PFAM:PF13516	PFAM:PF13943	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248
SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI0002954AA0	InterPro:WPP_dom	InterPro:WPP_sf	SEG:seg

Description

No Description!

Coordinates

chrchr3H:-:630738144..630741486

Molecular Weight (calculated)

60125.2 Da

IEP (calculated)

4.293

GRAVY (calculated)

-0.317

Length

554 amino acids

Sequence
(BLAST)

001: MASVVQDFQP RTFSIKLWPP SESTRLMLVE RMTKNLCNES IFSRKYGLLG KEEAHENAKR IEEMCFASAD EHFKTVPDGD GSSAVQLYAK ETSKLMLEVL
101: KKGPRTTAEP EAPVIDTPME PADTLFDISG GKRAFIEADE AKELLSPLMK PGNSYSRICL SNRSFGIGAA NVAGPILESI RTQLKEVDIS DFVAGRPEDE
201: ALDVMRIFSK ALAGSVLRYL NISDNALGEK GVRAFTELLK SQGNLEELYV MNDGISGEAA KALSELIPST EKLKVLHFHN NMTGDEGAMF IAEMVKRSPN
301: LESFRCSATR IGSDGGVALA EALGTCTRLK KLDIRDNLFG VEAGVALSET LPKLGDLVEL YLSDLNLENE GTIAIVNVLK ESAPQLEILE MAGNEITADA
401: AKPLAECLTA MQSLKKLTLA ENELKDAGAV AVAKSLQEGH PDLKELDVST NLFQRSGARC FAQAVANKPG FLLLNMNANY IPEEGIDEVR KILKAGENSA
501: DVLGPLDENE PEGNPDDEDE EEDEDDEAKY GDGNGKDAGL GSKLQDLQVE AEED

Best Arabidopsis Sequence Match ( AT3G63130.1 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.