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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69762
CDX73773
CDX77962
CDX89333
CDX90677
CDX94330
CDX97101
CDY17403
CDY28989
CDY32806
CDY67893

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G63130.1 CDX73773 AT3G50910.1 21798944
AT3G63130.1 CDX77962 AT3G50910.1 21798944
AT3G63130.1 CDX90677 AT3G50910.1 21798944
AT3G63130.1 CDY28989 AT3G50910.1 21798944
AT3G63130.1 CDY67893 AT3G50910.1 21798944
AT3G63130.1 CDX89333 AT4G26455.1 17600715
AT3G63130.1 CDX94330 AT4G26455.1 17600715
AT3G63130.1 CDX89333 AT4G26455.1 20579133
AT3G63130.1 CDX94330 AT4G26455.1 20579133
AT3G63130.1 CDX69762 AT5G11390.1 18591351
AT3G63130.1 CDX97101 AT5G11390.1 18591351
AT3G63130.1 CDY17403 AT5G56210.1 17600715
AT3G63130.1 CDY32806 AT5G56210.1 17600715
AT3G63130.1 CDY17403 AT5G56210.1 20579133
AT3G63130.1 CDY32806 AT5G56210.1 20579133
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX89174 Canola plastid 89.94 56.4
CDY56462 Canola cytosol, plastid 87.57 55.33
CDY16082 Canola cytosol 18.34 54.87
EES07543 Sorghum cytosol 40.53 54.58
AT3G63130.1 Thale cress plastid 85.5 54.02
CDX76683 Canola mitochondrion 87.28 50.0
CDY02566 Canola cytosol 28.7 48.99
Zm00001d051112_P001 Maize plasma membrane 58.58 38.37
CDX92540 Canola cytosol 63.31 38.21
Os05t0543200-01 Rice plasma membrane 60.95 37.87
Zm00001d017239_P001 Maize mitochondrion, plasma membrane 58.28 37.67
GSMUA_Achr11P... Banana cytosol, plastid 59.76 36.86
TraesCS1A01G256200.1 Wheat cytosol 59.76 36.73
EES05430 Sorghum cytosol, nucleus, plastid 58.88 36.65
Os05t0409200-00 Rice cytosol 11.54 36.45
TraesCS1B01G266900.1 Wheat plastid 59.17 36.3
TraesCS1D01G255600.1 Wheat cytosol, plastid 58.88 35.86
EES05435 Sorghum cytosol, plastid 58.58 35.48
TraesCS3D01G394300.1 Wheat cytosol, plastid 57.69 35.2
TraesCS3B01G433100.1 Wheat cytosol, plastid 57.69 35.2
HORVU3Hr1G090080.1 Barley plastid 57.1 34.84
TraesCS3A01G400100.1 Wheat plastid 57.99 33.28
CDY05221 Canola cytosol, mitochondrion, nucleus, plastid 18.05 31.94
CDY27720 Canola cytosol, mitochondrion 22.78 31.69
HORVU1Hr1G063300.3 Barley plastid 58.88 30.47
Zm00001d034691_P001 Maize cytosol 34.02 30.26
CDY44911 Canola cytosol 21.01 28.29
GSMUA_Achr8P13660_001 Banana cytosol 39.94 22.06
Zm00001d043604_P002 Maize cytosol 24.85 15.64
Zm00001d046105_P001 Maize peroxisome 23.67 13.61
CDX93413 Canola plastid 22.19 12.56
CDY55048 Canola plastid 21.89 12.4
CDY20626 Canola plastid 21.3 12.06
CDY20954 Canola plastid 21.3 11.96
Zm00001d052426_P001 Maize cytosol 3.85 9.49
CDX93932 Canola cytosol 0.59 1.74
Protein Annotations
EnsemblPlants:CDX93931EnsemblPlantsGene:GSBRNA2T00156756001Gene3D:3.80.10.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001611InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rptPANTHER:PTHR24106PANTHER:PTHR24106:SF248
PFAM:PF13516ProteinID:CDX93931ProteinID:CDX93931.1SEG:segSMART:SM00368SUPFAM:SSF52047
UniParc:UPI0004EE41EBMapMan:23.5.1.5::::
Description
BnaC04g20900D
Coordinates
chrLK031878:-:741388..742404
Molecular Weight (calculated)
36839.4 Da
IEP (calculated)
4.127
GRAVY (calculated)
-0.307
Length
338 amino acids
Sequence
(BLAST)
001: MNMFSSALEG SKLRFLDLSD NALGEKGIRA FASLIKSQRD LEELYLMNDG ISHDAARAVR DLLPCTAKIR VLQFHNNMTG DEGAAAIAEI VKNCPSLEDF
101: RCSSTRIGSE GGVALAEALE SCSRLKKLDL RDNMFGVEGG IALAQTLSVL AELTEIYMSY LNLEDEGTEA LSEALVNSAP SLRVLELAGN DITLQSTGKL
201: AACIASKQCL SKLNLSENEL KDEGTILIAK ALDEGHDQLT EVDLSTNMMR RAGARALAQA VLKKHTFKLL NINGNFISEE GVDEVNDMFK DSPEKLGLLD
301: DNDPDGEDFD DEDEEAEEEE DSELEAKLGG LKIKQEEE
Best Arabidopsis Sequence Match ( AT3G06000.1 )
(BLAST)
001: MVDTSLTNED TIEETAFETC THIKVGVSMS KPFSSFSFLT VINLSYTNLE NGGAIALVNA LKNSAPSLQV IEMAGNNITY EAATAIAVCL AAKRHLKKLN
101: LSENDLKDEG CVEIVKSMED WELEYVDMSY NDLRREGALR LARVVVKKGS FKMLNIDGNM ISLKGIEEIK VIFTNCPKLL GPLDKNVYNV DDDDDLREND
201: EDEFVSVFIF Y
Arabidopsis Description
F2O10.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SFG4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.