CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69762
CDX89333
CDX94330
CDX97101
CDY17403
CDY32806

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19320.1	CDX89333	AT4G26455.1	17600715
AT5G19320.1	CDX94330	AT4G26455.1	17600715
AT5G19320.1	CDX69762	AT5G11390.1	18591351
AT5G19320.1	CDX97101	AT5G11390.1	18591351
AT5G19320.1	CDY17403	AT5G56210.1	17600715
AT5G19320.1	CDY32806	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G19320.1	Thale cress	cytosol	83.21	85.5
CDY02566	Canola	cytosol	27.32	77.27
CDY16082	Canola	cytosol	14.64	72.57
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	66.43	69.02
KRG91256	Soybean	endoplasmic reticulum	65.36	68.8
KRH35557	Soybean	endoplasmic reticulum, nucleus	65.18	68.48
Solyc01g079680.2.1	Tomato	plastid	66.25	67.45
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	63.04	67.11
PGSC0003DMT400023310	Potato	plastid	65.54	66.37
CDX93931	Canola	cytosol	38.21	63.31
TraesCS1B01G266900.1	Wheat	plastid	61.79	62.79
TraesCS1A01G256200.1	Wheat	cytosol	61.43	62.55
GSMUA_Achr11P...	Banana	cytosol, plastid	60.71	62.04
Os05t0543200-01	Rice	plasma membrane	59.82	61.58
EES05430	Sorghum	cytosol, nucleus, plastid	59.64	61.51
TraesCS1D01G255600.1	Wheat	cytosol, plastid	60.89	61.44
Zm00001d051112_P001	Maize	plasma membrane	55.89	60.66
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	56.25	60.23
CDY56462	Canola	cytosol, plastid	57.5	60.19
TraesCS3B01G433100.1	Wheat	cytosol, plastid	59.29	59.93
EES05435	Sorghum	cytosol, plastid	59.64	59.86
TraesCS3D01G394300.1	Wheat	cytosol, plastid	59.11	59.75
HORVU3Hr1G090080.1	Barley	plastid	58.75	59.39
CDX89174	Canola	plastid	56.79	59.0
TraesCS3A01G400100.1	Wheat	plastid	59.64	56.71
EES07543	Sorghum	cytosol	25.18	56.18
CDX76683	Canola	mitochondrion	58.39	55.42
HORVU1Hr1G063300.3	Barley	plastid	60.89	52.22
CDX93932	Canola	cytosol	10.71	52.17
CDY44911	Canola	cytosol	22.5	50.2
Zm00001d052426_P001	Maize	cytosol	11.79	48.18
Zm00001d034691_P001	Maize	cytosol	31.07	45.79
GSMUA_Achr8P13660_001	Banana	cytosol	48.21	44.12
Os05t0409200-00	Rice	cytosol	7.5	39.25
CDY27720	Canola	cytosol, mitochondrion	16.61	38.27
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	12.32	36.13
Zm00001d043604_P002	Maize	cytosol	31.79	33.15
Zm00001d046105_P001	Maize	peroxisome	31.96	30.44
CDX93413	Canola	plastid	18.93	17.76
CDY20954	Canola	plastid	18.93	17.61
CDY55048	Canola	plastid	18.75	17.59
CDY20626	Canola	plastid	18.75	17.59

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	EnsemblPlants:CDX92540	ProteinID:CDX92540	ProteinID:CDX92540.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00154324001	InterPro:IPR001611
InterPro:IPR032675	InterPro:IPR038214	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13516	PFAM:PF13943
PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI0004EE8731	InterPro:WPP_dom
InterPro:WPP_sf	SEG:seg	:	:	:	:

Description

BnaA10g15790D

Coordinates

chrLK031872:+:1126126..1128211

Molecular Weight (calculated)

61381.6 Da

IEP (calculated)

4.301

GRAVY (calculated)

-0.321

Length

560 amino acids

Sequence
(BLAST)

001: MRLLETIHYA MRSSDLYNLL LMADTLDSRP HTFSIKLWPP SLPTRQALIE RMTNNLSSKT IFTDKFGSLT KDQAMENAKR IEDVAFSTAN LQFEREPDGD
101: GGSAVQLYAK ECSKMILEVL KKGPVCKAEE VSSASPCKET VFDISKDKRA FIEAEEAEEL LKPLKEPGNG YTKICFSNRS FGLGAARVAE PILASLKDQL
201: KVVDLSDFVA GRPEVEALEV MNIFSSALEG SVLSSLNLSD NALGEKGVRA FGTLLKSLSS LEELYLMNDG ISKEAAQAVS ELIPSTEKLR VLHFHNNMTG
301: DEGAVAISEV VKRSPLLENF RCSSTRVGEG GGIALSEALE NCTLMEKLDL RDNMFGTEAG VSLSKTLSRF DHLTEVYLSY LNLEDEGAIA VANALKDSAA
401: PIEVLEMAGN DITVEAASAI AACVAAKQDL NKLNLSENEL KDEGCVQIAK SVEEDHLKLQ YIDMSNNYIR RAGARALAQV VAKKEGFKLL NIDGNIISEE
501: GIEEVKEMLK KTPEVLGALD ENDPDGEEEE EDDEEDEEKE GEGNNELESK LKKLDVNEDD

Best Arabidopsis Sequence Match ( AT5G19320.2 )
(BLAST)

001: MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED

Arabidopsis Description

RANGAP2RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.