CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES14314
KXG21620
OQU78405
OQU81760
OQU85551
OQU86053

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	OQU78405	AT3G50910.1	21798944
AT3G63130.1	OQU85551	AT3G50910.1	21798944
AT3G63130.1	EER96942	AT4G26455.1	17600715
AT3G63130.1	EES14314	AT4G26455.1	17600715
AT3G63130.1	OQU81760	AT4G26455.1	17600715
AT3G63130.1	EER96942	AT4G26455.1	20579133
AT3G63130.1	EES14314	AT4G26455.1	20579133
AT3G63130.1	OQU81760	AT4G26455.1	20579133
AT3G63130.1	KXG21620	AT5G11390.1	18591351
AT3G63130.1	OQU86053	AT5G11390.1	18591351
AT3G63130.1	EER96942	AT5G56210.1	17600715
AT3G63130.1	EES14314	AT5G56210.1	17600715
AT3G63130.1	OQU81760	AT5G56210.1	17600715
AT3G63130.1	EER96942	AT5G56210.1	20579133
AT3G63130.1	EES14314	AT5G56210.1	20579133
AT3G63130.1	OQU81760	AT5G56210.1	20579133
AT5G19320.1	EER96942	AT4G26455.1	17600715
AT5G19320.1	EES14314	AT4G26455.1	17600715
AT5G19320.1	OQU81760	AT4G26455.1	17600715
AT5G19320.1	KXG21620	AT5G11390.1	18591351
AT5G19320.1	OQU86053	AT5G11390.1	18591351
AT5G19320.1	EER96942	AT5G56210.1	17600715
AT5G19320.1	EES14314	AT5G56210.1	17600715
AT5G19320.1	OQU81760	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05430	Sorghum	cytosol, nucleus, plastid	92.29	94.84
EES07543	Sorghum	cytosol	38.89	86.45
Os05t0543200-01	Rice	plasma membrane	83.51	85.66
TraesCS1B01G266900.1	Wheat	plastid	81.18	82.21
TraesCS1A01G256200.1	Wheat	cytosol	81.0	82.18
TraesCS1D01G255600.1	Wheat	cytosol, plastid	80.82	81.26
TraesCS3D01G394300.1	Wheat	cytosol, plastid	80.11	80.69
TraesCS3B01G433100.1	Wheat	cytosol, plastid	79.57	80.14
HORVU3Hr1G090080.1	Barley	plastid	79.21	79.78
TraesCS3A01G400100.1	Wheat	plastid	79.39	75.21
HORVU1Hr1G063300.3	Barley	plastid	81.9	69.98
GSMUA_Achr11P...	Banana	cytosol, plastid	67.38	68.61
VIT_07s0104g00520.t01	Wine grape	plastid	64.52	66.54
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	63.26	65.49
Zm00001d052426_P001	Maize	cytosol	15.95	64.96
KRG91256	Soybean	endoplasmic reticulum	61.65	64.66
KRH32020	Soybean	cytosol	61.83	64.61
KRH35557	Soybean	endoplasmic reticulum, nucleus	61.65	64.54
KRH71426	Soybean	nucleus	61.47	64.35
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	60.04	63.69
Solyc09g065190.1.1	Tomato	plastid	60.93	63.67
PGSC0003DMT400086322	Potato	cytosol	60.93	63.67
AT5G19320.1	Thale cress	cytosol	60.04	61.47
Solyc01g079680.2.1	Tomato	plastid	60.39	61.27
Os05t0409200-00	Rice	cytosol	11.65	60.75
PGSC0003DMT400023310	Potato	plastid	59.68	60.22
Bra007730.1-P	Field mustard	cytosol, plastid	57.71	60.19
CDY56462	Canola	cytosol, plastid	57.71	60.19
AT3G63130.1	Thale cress	plastid	57.71	60.19
CDX92540	Canola	cytosol	59.86	59.64
CDX93931	Canola	cytosol	35.48	58.58
Bra040432.1-P	Field mustard	plastid	56.09	58.4
CDX89174	Canola	plastid	55.73	57.7
CDY16082	Canola	cytosol	11.65	57.52
CDY02566	Canola	cytosol	19.53	55.05
CDX76683	Canola	mitochondrion	57.35	54.24
CDX93932	Canola	cytosol	11.11	53.91
Bra026911.1-P	Field mustard	cytosol	12.37	52.27
Bra013834.1-P	Field mustard	cytosol	11.29	47.73
GSMUA_Achr8P13660_001	Banana	cytosol	52.15	47.55
Bra020034.1-P	Field mustard	cytosol	19.53	44.31
CDY44911	Canola	cytosol	19.18	42.63
AT3G06000.1	Thale cress	cytosol	15.59	41.23
Zm00001d043604_P002	Maize	cytosol	38.53	40.04
Zm00001d046105_P001	Maize	peroxisome	39.43	37.41
Bra020788.1-P	Field mustard	cytosol, mitochondrion	15.41	36.44
CDY27720	Canola	cytosol, mitochondrion	15.59	35.8
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	10.75	31.41
KXG19681	Sorghum	plastid	17.92	15.2

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	EntrezGene:8072476	UniProt:C5XXQ0	EnsemblPlants:EES05435
ProteinID:EES05435	ProteinID:EES05435.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	InterPro:IPR038214	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13516	PFAM:PF13943
PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368	EnsemblPlantsGene:SORBI_3004G216400	SUPFAM:SSF52047	unigene:Sbi.13311
UniParc:UPI0001A8534A	InterPro:WPP_dom	InterPro:WPP_sf	RefSeq:XP_002452459.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:56605471..56609930

Molecular Weight (calculated)

60859.0 Da

IEP (calculated)

4.292

GRAVY (calculated)

-0.356

Length

558 amino acids

Sequence
(BLAST)

001: MDPAQYFQPR TFSIKLWPPS ESTRLMLVER MTKNLSTESE SIFSRKYGTL GKEEAHENAK RIEELCFASA DEHFKREPDG DGSSAVQLYA KETSKMMLEV
101: LKKGPRTTAE LEAPVADTPL VPDTPLVPAD TPLVPADTVL DISGGKRAFI EADEAKELLS PLTKPGNSYQ RICFSNRSFG IGAANVAGPI LESVKNQLTE
201: VDISDFVAGR PEDEALDVMR IFSKALEGSV LRYLNISDNA LGEKGVRAFS ELLKSQESLE ELYVMNDGIS EEAAKALSEL IPATEKLKVL HFHNNMTGDE
301: GAMYIAEMVK RSPNVESFRC SATRIGSDGG VALSEALGTC TRLKKLDLRD NLFGVDAGLA LSKTLPKLPD LVELYLSDLN LENEGTIAIV KALKQSAPQL
401: EVLEMAGNEI NAKAAPDLAE CLTAMQSLKK LTLAENELKD GGAVIIAKSL EDGHTDLKEL DVSTNMLQRV GARCFARAVA DKPAFVQLNI NGNFISDEGI
501: DEVKEILKAG KKSLDVLGSL DENEPDGEPD DEEEDQDAED NEDELDSKLQ SVKVEQDD

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.