Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020788.1-P | Field mustard | cytosol, mitochondrion | 56.4 | 50.42 |
| CDY05221 | Canola | cytosol, mitochondrion, nucleus, plastid | 43.6 | 48.17 |
| CDY27720 | Canola | cytosol, mitochondrion | 55.45 | 48.15 |
| Os05t0409200-00 | Rice | cytosol | 20.85 | 41.12 |
| EES07543 | Sorghum | cytosol | 30.33 | 25.5 |
| AT5G19320.1 | Thale cress | cytosol | 50.24 | 19.45 |
| KRH35557 | Soybean | endoplasmic reticulum, nucleus | 43.13 | 17.07 |
| KRG91256 | Soybean | endoplasmic reticulum | 42.65 | 16.92 |
| VIT_05s0020g02970.t01 | Wine grape | cytosol, plastid | 43.13 | 16.88 |
| Solyc01g079680.2.1 | Tomato | plastid | 43.6 | 16.73 |
| PGSC0003DMT400023310 | Potato | plastid | 43.6 | 16.64 |
| Zm00001d017239_P001 | Maize | mitochondrion, plasma membrane | 41.23 | 16.63 |
| VIT_19s0014g03800.t01 | Wine grape | cytosol, plastid | 41.23 | 16.54 |
| AT3G63130.1 | Thale cress | plastid | 41.23 | 16.26 |
| Zm00001d051112_P001 | Maize | plasma membrane | 39.34 | 16.09 |
| EES05430 | Sorghum | cytosol, nucleus, plastid | 41.23 | 16.02 |
| Os05t0543200-01 | Rice | plasma membrane | 41.23 | 15.99 |
| TraesCS1B01G266900.1 | Wheat | plastid | 41.23 | 15.79 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 40.76 | 15.69 |
| TraesCS1D01G255600.1 | Wheat | cytosol, plastid | 41.23 | 15.68 |
| EES05435 | Sorghum | cytosol, plastid | 41.23 | 15.59 |
| TraesCS1A01G256200.1 | Wheat | cytosol | 39.34 | 15.09 |
| HORVU3Hr1G090080.1 | Barley | plastid | 37.91 | 14.44 |
| TraesCS3B01G433100.1 | Wheat | cytosol, plastid | 37.44 | 14.26 |
| TraesCS3D01G394300.1 | Wheat | cytosol, plastid | 37.44 | 14.26 |
| TraesCS3A01G400100.1 | Wheat | plastid | 37.44 | 13.41 |
| GSMUA_Achr8P13660_001 | Banana | cytosol | 37.91 | 13.07 |
| HORVU1Hr1G063300.3 | Barley | plastid | 40.28 | 13.02 |
| Zm00001d034691_P001 | Maize | cytosol | 15.17 | 8.42 |
| Zm00001d052426_P001 | Maize | cytosol | 4.74 | 7.3 |
| AT1G10510.1 | Thale cress | plastid | 20.85 | 7.27 |
| Zm00001d043604_P002 | Maize | cytosol | 15.64 | 6.15 |
| Zm00001d046105_P001 | Maize | peroxisome | 13.74 | 4.93 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:819771 | UniProt:A0A178VK97 | ProteinID:AAF23216.1 | ProteinID:AEE74328.1 |
| ArrayExpress:AT3G06000 | EnsemblPlantsGene:AT3G06000 | RefSeq:AT3G06000 | TAIR:AT3G06000 | RefSeq:AT3G06000-TAIR-G | EnsemblPlants:AT3G06000.1 |
| TAIR:AT3G06000.1 | Unigene:At.53197 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | RefSeq:NP_187251.1 | ProteinID:OAP06779.1 |
| PFAM:PF13516 | PANTHER:PTHR24106 | PANTHER:PTHR24106:SF248 | UniProt:Q9SFG4 | SMART:SM00368 | SUPFAM:SSF52047 |
| UniParc:UPI00000A5B1E | SEG:seg | : | : | : | : |
Description
F2O10.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SFG4]
Coordinates
chr3:+:1801446..1802081
Molecular Weight (calculated)
23567.1 Da
IEP (calculated)
4.303
GRAVY (calculated)
-0.096
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDTSLTNED TIEETAFETC THIKVGVSMS KPFSSFSFLT VINLSYTNLE NGGAIALVNA LKNSAPSLQV IEMAGNNITY EAATAIAVCL AAKRHLKKLN
101: LSENDLKDEG CVEIVKSMED WELEYVDMSY NDLRREGALR LARVVVKKGS FKMLNIDGNM ISLKGIEEIK VIFTNCPKLL GPLDKNVYNV DDDDDLREND
201: EDEFVSVFIF Y
101: LSENDLKDEG CVEIVKSMED WELEYVDMSY NDLRREGALR LARVVVKKGS FKMLNIDGNM ISLKGIEEIK VIFTNCPKLL GPLDKNVYNV DDDDDLREND
201: EDEFVSVFIF Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.