Factsheet for Os05t0409200-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0235350-00
Os02t0704600-01
Os04t0471300-01
Os05t0241000-01
Os08t0497900-01
Os09t0481300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	Os02t0704600-01	AT3G50910.1	21798944
AT3G63130.1	Os04t0471300-01	AT4G26455.1	17600715
AT3G63130.1	Os08t0497900-01	AT4G26455.1	17600715
AT3G63130.1	Os09t0481300-01	AT4G26455.1	17600715
AT3G63130.1	Os04t0471300-01	AT4G26455.1	20579133
AT3G63130.1	Os08t0497900-01	AT4G26455.1	20579133
AT3G63130.1	Os09t0481300-01	AT4G26455.1	20579133
AT3G63130.1	Os01t0235350-00	AT5G11390.1	18591351
AT3G63130.1	Os05t0241000-01	AT5G11390.1	18591351
AT3G63130.1	Os04t0471300-01	AT5G56210.1	17600715
AT3G63130.1	Os08t0497900-01	AT5G56210.1	17600715
AT3G63130.1	Os09t0481300-01	AT5G56210.1	17600715
AT3G63130.1	Os04t0471300-01	AT5G56210.1	20579133
AT3G63130.1	Os08t0497900-01	AT5G56210.1	20579133
AT3G63130.1	Os09t0481300-01	AT5G56210.1	20579133
AT5G19320.1	Os04t0471300-01	AT4G26455.1	17600715
AT5G19320.1	Os08t0497900-01	AT4G26455.1	17600715
AT5G19320.1	Os09t0481300-01	AT4G26455.1	17600715
AT5G19320.1	Os01t0235350-00	AT5G11390.1	18591351
AT5G19320.1	Os05t0241000-01	AT5G11390.1	18591351
AT5G19320.1	Os04t0471300-01	AT5G56210.1	17600715
AT5G19320.1	Os08t0497900-01	AT5G56210.1	17600715
AT5G19320.1	Os09t0481300-01	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G06000.1	Thale cress	cytosol	41.12	20.85
Bra026911.1-P	Field mustard	cytosol	24.3	19.7
CDY16082	Canola	cytosol	20.56	19.47
EES07543	Sorghum	cytosol	42.99	18.33
Bra020788.1-P	Field mustard	cytosol, mitochondrion	35.51	16.1
CDY27720	Canola	cytosol, mitochondrion	34.58	15.23
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	25.23	14.14
Os05t0543200-01	Rice	plasma membrane	66.36	13.05
Zm00001d051112_P001	Maize	plasma membrane	58.88	12.21
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	58.88	12.05
EES05430	Sorghum	cytosol, nucleus, plastid	60.75	11.97
TraesCS1D01G255600.1	Wheat	cytosol, plastid	60.75	11.71
EES05435	Sorghum	cytosol, plastid	60.75	11.65
TraesCS1A01G256200.1	Wheat	cytosol	59.81	11.64
CDY02566	Canola	cytosol	21.5	11.62
TraesCS1B01G266900.1	Wheat	plastid	59.81	11.62
CDX93931	Canola	cytosol	36.45	11.54
HORVU3Hr1G090080.1	Barley	plastid	56.07	10.83
TraesCS3D01G394300.1	Wheat	cytosol, plastid	55.14	10.65
TraesCS3B01G433100.1	Wheat	cytosol, plastid	55.14	10.65
TraesCS3A01G400100.1	Wheat	plastid	56.07	10.19
Bra013834.1-P	Field mustard	cytosol	12.15	9.85
HORVU1Hr1G063300.3	Barley	plastid	57.01	9.34
PGSC0003DMT400086322	Potato	cytosol	44.86	8.99
GSMUA_Achr11P...	Banana	cytosol, plastid	45.79	8.94
Solyc09g065190.1.1	Tomato	plastid	43.93	8.8
PGSC0003DMT400023310	Potato	plastid	44.86	8.68
KRH35557	Soybean	endoplasmic reticulum, nucleus	42.99	8.63
Solyc01g079680.2.1	Tomato	plastid	43.93	8.55
VIT_07s0104g00520.t01	Wine grape	plastid	42.99	8.5
KRG91256	Soybean	endoplasmic reticulum	42.06	8.46
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	42.06	8.35
KRH71426	Soybean	nucleus	40.19	8.07
KRH32020	Soybean	cytosol	40.19	8.05
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	39.25	7.98
AT5G19320.1	Thale cress	cytosol	40.19	7.89
AT3G63130.1	Thale cress	plastid	39.25	7.85
GSMUA_Achr8P13660_001	Banana	cytosol	43.93	7.68
CDY56462	Canola	cytosol, plastid	38.32	7.66
Bra007730.1-P	Field mustard	cytosol, plastid	38.32	7.66
CDX92540	Canola	cytosol	39.25	7.5
Bra040432.1-P	Field mustard	plastid	35.51	7.09
CDX89174	Canola	plastid	35.51	7.05
CDX76683	Canola	mitochondrion	38.32	6.95
Zm00001d034691_P001	Maize	cytosol	22.43	6.32
CDY44911	Canola	cytosol	10.28	4.38
Bra020034.1-P	Field mustard	cytosol	8.41	3.66
Zm00001d052426_P001	Maize	cytosol	4.67	3.65
Os06t0237502-00	Rice	plastid	19.63	3.42
Zm00001d046105_P001	Maize	peroxisome	14.95	2.72
Zm00001d043604_P002	Maize	cytosol	13.08	2.61
CDX93932	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Os05t0409200-00	EnsemblPlantsGene:Os05g0409200	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248
PFAM:PF13516	ProteinID:BAS93983.1	SEG:seg	SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI000393959B
UniProt:A0A0P0WMG5	MapMan:35.2	:	:	:	:

Description

Hypothetical conserved gene. (Os05t0409200-00)

Coordinates

chr5:+:19981911..19982462

Molecular Weight (calculated)

11650.0 Da

IEP (calculated)

4.704

GRAVY (calculated)

-0.215

Length

107 amino acids

Sequence
(BLAST)

001: ILLGDLNLEN KGTLAIVNTR KQLTPQIEVL EMARNKINAK EAQALAECLT TLQSLKKLTL AENGLKDDGA VVIAKALEDG HQDLKELDVS KEYVAEDGSS
101: VFCPCNR

Best Arabidopsis Sequence Match ( AT5G19320.2 )
(BLAST)

001: MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED

Arabidopsis Description

RANGAP2RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.