Factsheet for PGSC0003DMT400086322

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065190.1.1	Tomato	plastid	98.5	98.5
VIT_07s0104g00520.t01	Wine grape	plastid	75.84	74.86
KRH71426	Soybean	nucleus	70.04	70.17
KRH32020	Soybean	cytosol	70.04	70.04
GSMUA_Achr11P...	Banana	cytosol, plastid	67.42	65.69
Os05t0543200-01	Rice	plasma membrane	65.92	64.71
PGSC0003DMT400023310	Potato	plastid	66.85	64.56
TraesCS1B01G266900.1	Wheat	plastid	65.54	63.52
TraesCS1A01G256200.1	Wheat	cytosol	65.17	63.27
TraesCS1D01G255600.1	Wheat	cytosol, plastid	64.98	62.52
EES05430	Sorghum	cytosol, nucleus, plastid	63.3	62.25
Zm00001d051112_P001	Maize	plasma membrane	60.11	62.21
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	60.86	62.14
EES07543	Sorghum	cytosol	28.84	61.35
EES05435	Sorghum	cytosol, plastid	63.67	60.93
TraesCS3B01G433100.1	Wheat	cytosol, plastid	63.11	60.83
TraesCS3D01G394300.1	Wheat	cytosol, plastid	63.11	60.83
HORVU3Hr1G090080.1	Barley	plastid	62.73	60.47
TraesCS3A01G400100.1	Wheat	plastid	62.73	56.88
Zm00001d052426_P001	Maize	cytosol	14.04	54.74
HORVU1Hr1G063300.3	Barley	plastid	65.36	53.45
Zm00001d034691_P001	Maize	cytosol	33.15	46.58
GSMUA_Achr8P13660_001	Banana	cytosol	53.0	46.24
Os05t0409200-00	Rice	cytosol	8.99	44.86
Bra020034.1-P	Field mustard	cytosol	19.48	42.28
CDY44911	Canola	cytosol	19.48	41.43
Zm00001d043604_P002	Maize	cytosol	32.4	32.22
Zm00001d046105_P001	Maize	peroxisome	32.4	29.42
PGSC0003DMT400040302	Potato	plastid	17.98	15.76

Protein Annotations

Gene3D:1.10.246.200	EntrezGene:102577850	MapMan:23.5.1.5	Gene3D:3.80.10.10	EMBL:AM411449	ProteinID:CAL69643
ProteinID:CAL69643.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	InterPro:IPR038214	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	UniProt:M1DBH4	PFAM:PF13516
PFAM:PF13943	EnsemblPlantsGene:PGSC0003DMG400035893	PGSC:PGSC0003DMG400035893	EnsemblPlants:PGSC0003DMT400086322	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248
SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI000296759A	InterPro:WPP_dom	InterPro:WPP_sf	RefSeq:XP_006349676.2
RefSeq:XP_015165155.1	SEG:seg	:	:	:	:

Description

Ran GTPase-activating protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400035893]

Coordinates

chr9:-:47587991..47589595

Molecular Weight (calculated)

58097.7 Da

IEP (calculated)

4.309

GRAVY (calculated)

-0.283

Length

534 amino acids

Sequence
(BLAST)

001: MDSAGFSMKL WPPSLSTRLM LVERMTKNLI TPSILSRKYG LLSKEEAEED AKQIEALAFD SANQHFDKEP DGDGSSAVQL YAKESSKLML EVIKRGPQTK
101: ESAEGIVSEK VKASDETTIF DISKGRRDFI SAEEASELLK PLSEPGNNYK RICFSNRSFG VDAAKIAGPI LSSLKDQLTE VDLSDFVAGR PEEEALEVME
201: IFSSALDACD LRYLDLSNNA LGEKGIRAFG ALLKSQKNLE ELYLMNDGIS EEAAQAVCEL IPSTDKLRIL HFHNNMTGDE GALAISKLVK HSPALEDFRC
301: SSTRVGSEGG VALSQALGEC RNLKKVDLRD NMFGVEAGIA LSKVLSIFSG LTEIYLSYLN LEDEGSIALA NVLKESAPSL EVLEMDGNDI TAKAAPALAA
401: CIAAKQFLTT LKLGENELKD EGAILIAKAL EDGHGQLTEV DMSTNAIRRA GARCLAQAVV NKSGFKVLNI NGNFISDEGI DEVKDIFKNS LHVLGPLDDN
501: DPEGEDYDEE ADEGGDNEND LEIRLKDLDI KQEE

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.