Factsheet for PGSC0003DMT400023310

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
plasma membrane 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022426
PGSC0003DMT400056956
PGSC0003DMT400068312

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19320.1	PGSC0003DMT400022426	AT4G26455.1	17600715
AT5G19320.1	PGSC0003DMT400056956	AT4G26455.1	17600715
AT5G19320.1	PGSC0003DMT400068312	AT5G11390.1	18591351
AT5G19320.1	PGSC0003DMT400022426	AT5G56210.1	17600715
AT5G19320.1	PGSC0003DMT400056956	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079680.2.1	Tomato	plastid	92.41	92.91
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	68.72	70.5
KRG91256	Soybean	endoplasmic reticulum	66.73	69.36
AT5G19320.1	Thale cress	cytosol	67.81	68.81
KRH35557	Soybean	endoplasmic reticulum, nucleus	65.82	68.29
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	64.2	67.49
PGSC0003DMT400086322	Potato	cytosol	64.56	66.85
CDX92540	Canola	cytosol	66.37	65.54
CDY02566	Canola	cytosol	22.97	64.14
CDY16082	Canola	cytosol	12.84	62.83
TraesCS1B01G266900.1	Wheat	plastid	62.57	62.79
GSMUA_Achr11P...	Banana	cytosol, plastid	61.66	62.23
TraesCS1A01G256200.1	Wheat	cytosol	61.84	62.18
TraesCS1D01G255600.1	Wheat	cytosol, plastid	62.21	61.98
Bra026911.1-P	Field mustard	cytosol	14.65	61.36
EES05430	Sorghum	cytosol, nucleus, plastid	60.22	61.33
Os05t0543200-01	Rice	plasma membrane	60.04	61.03
Zm00001d051112_P001	Maize	plasma membrane	56.6	60.66
TraesCS3B01G433100.1	Wheat	cytosol, plastid	60.4	60.29
TraesCS3D01G394300.1	Wheat	cytosol, plastid	60.04	59.93
EES05435	Sorghum	cytosol, plastid	60.22	59.68
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	56.24	59.46
HORVU3Hr1G090080.1	Barley	plastid	58.95	58.84
TraesCS3A01G400100.1	Wheat	plastid	60.22	56.54
EES07543	Sorghum	cytosol	25.5	56.18
HORVU1Hr1G063300.3	Barley	plastid	61.12	51.76
Zm00001d034691_P001	Maize	cytosol	32.37	47.11
Os05t0409200-00	Rice	cytosol	8.68	44.86
Zm00001d052426_P001	Maize	cytosol	11.03	44.53
GSMUA_Achr8P13660_001	Banana	cytosol	49.01	44.28
AT3G06000.1	Thale cress	cytosol	16.64	43.6
Bra020788.1-P	Field mustard	cytosol, mitochondrion	16.27	38.14
CDY27720	Canola	cytosol, mitochondrion	16.09	36.63
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	11.57	33.51
Zm00001d043604_P002	Maize	cytosol	30.74	31.66
Zm00001d046105_P001	Maize	peroxisome	30.2	28.4
PGSC0003DMT400040302	Potato	plastid	18.26	16.58

Protein Annotations

Gene3D:1.10.246.200	EntrezGene:102577808	MapMan:23.5.1.5	Gene3D:3.80.10.10	EMBL:AM411448	ProteinID:CAL69642
ProteinID:CAL69642.1	ProteinID:CCG20357	ProteinID:CCG20357.1	ProteinID:CCG20358	ProteinID:CCG20358.1	ProteinID:CCG20359
ProteinID:CCG20359.1	ProteinID:CCG20360	ProteinID:CCG20360.1	ProteinID:CCG20361	ProteinID:CCG20361.1	ProteinID:CCG20362
ProteinID:CCG20362.1	ProteinID:CCG20363	ProteinID:CCG20363.1	ProteinID:CCG20364	ProteinID:CCG20364.1	ProteinID:CCG20365
ProteinID:CCG20365.1	ProteinID:CCG20366	ProteinID:CCG20366.1	ProteinID:CCG20367	ProteinID:CCG20367.1	ProteinID:CCG20368
ProteinID:CCG20368.1	ProteinID:CCG20369	ProteinID:CCG20369.1	ProteinID:CCG20370	ProteinID:CCG20370.1	ProteinID:CCG20371
ProteinID:CCG20371.1	ProteinID:CCG20372	ProteinID:CCG20372.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EMBL:HE681687	EMBL:HE681688	EMBL:HE681689	EMBL:HE681690	EMBL:HE681691	EMBL:HE681692
EMBL:HE681693	EMBL:HE681694	EMBL:HE681695	EMBL:HE681696	EMBL:HE681697	EMBL:HE681698
EMBL:HE681699	EMBL:HE681700	EMBL:HE681701	EMBL:HE681702	InterPro:IPR001611	InterPro:IPR032675
InterPro:IPR038214	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	UniProt:M1AI54	PFAM:PF13516	PFAM:PF13943
EnsemblPlantsGene:PGSC0003DMG400009029	PGSC:PGSC0003DMG400009029	EnsemblPlants:PGSC0003DMT400023310	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368
SUPFAM:SSF52047	UniParc:UPI000294A847	InterPro:WPP_dom	InterPro:WPP_sf	RefSeq:XP_006349212.1	RefSeq:XP_006349213.1
SEG:seg	:	:	:	:	:

Description

Ran GTPase-activating protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400009029]

Coordinates

chr1:-:62287774..62290829

Molecular Weight (calculated)

60597.4 Da

IEP (calculated)

4.350

GRAVY (calculated)

-0.386

Length

553 amino acids

Sequence
(BLAST)

001: MDATTANSQR RPFSIKLWPP SENTRKMLVE RMTNNLSSPT IFTRKYRSLS KEEAAKNAEE IEDAAFTIAN QHYEKEPDGD GSSAVQLYAR ECSKLILEIL
101: KKIPKSEDKE ISISEVVPTV QETFFDISKG KRAFIEAEEA QELLKPLKEP GNSYSKICFS NRSFGIDAAR IAGPILAALK DQLKEVDLSD FVAGRNEAEA
201: LDVMNIFSEA LEGSNLKFLN LSDNALGEKG VRAFGKLFQS QTNLEELFLM NDGISQEAAN AVSELVPSTE KLKVLHFHNN MTGDEGAVAI AEIVKRSPLL
301: EDFRCSSTRV GSEGGSVLCE ALGMCSHLKK LDLRDNMFGP EVGLVLCKAL SKHENLTEIY LSYLNLEDEG AIAIANALKD SAPSLAVLEM AGNDITAEAA
401: SAIASCIAAK QLLAKLSLGE NELKDEGAIQ IAKALEGHSH LIEVDMSSNA LRRAGARVLA QTVLHKDEFK LLNVNGNFIS EEGVDELKEI FKKSPEMLAS
501: LEDNDPEGED EDDEEDEEKE SGDEGKDVED ELESKLKNLD VKQEASLDTP DSN

Best Arabidopsis Sequence Match ( AT5G19320.2 )
(BLAST)

001: MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED

Arabidopsis Description

RANGAP2RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.