Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400056956 | Potato | nucleus | 49.15 | 48.16 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 36.01 | 34.36 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 22.35 | 31.19 |
| KRH56393 | Soybean | cytosol | 31.23 | 31.18 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 21.16 | 31.08 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 14.51 | 30.8 |
| KRH62532 | Soybean | endoplasmic reticulum | 30.55 | 30.6 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 20.82 | 30.5 |
| CDY17403 | Canola | nucleus | 14.33 | 30.43 |
| CDX82542 | Canola | plastid | 22.7 | 30.02 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 22.35 | 29.64 |
| Bra026434.1-P | Field mustard | nucleus | 24.74 | 29.29 |
| CDX89333 | Canola | nucleus | 24.74 | 29.29 |
| CDY24192 | Canola | plastid | 15.02 | 29.04 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 13.48 | 28.32 |
| AT5G56210.1 | Thale cress | nucleus | 24.4 | 28.09 |
| AT4G26455.1 | Thale cress | nucleus | 23.38 | 28.02 |
| CDX94330 | Canola | nucleus | 23.38 | 27.9 |
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 13.82 | 27.18 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 27.13 | 26.77 |
| GSMUA_Achr10P... | Banana | cytosol | 22.7 | 26.39 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 13.48 | 26.16 |
| TraesCS7A01G240200.1 | Wheat | cytosol | 23.89 | 25.74 |
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 23.21 | 25.28 |
| Zm00001d005997_P002 | Maize | plastid | 23.04 | 25.09 |
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 13.14 | 25.0 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 22.87 | 24.95 |
| Os08t0497900-01 | Rice | nucleus | 19.62 | 24.89 |
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 23.04 | 24.77 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 21.84 | 24.71 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 23.21 | 24.64 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 23.04 | 24.64 |
| Os09t0481300-01 | Rice | nucleus | 22.01 | 24.48 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 16.72 | 24.44 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 22.7 | 24.36 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 22.53 | 24.35 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 24.4 | 24.03 |
| HORVU7Hr1G048940.3 | Barley | cytosol | 23.04 | 23.64 |
| EES14314 | Sorghum | nucleus | 20.31 | 23.52 |
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 18.09 | 22.94 |
| OQU81760 | Sorghum | nucleus | 15.87 | 21.83 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 17.75 | 20.39 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 17.75 | 20.39 |
| Zm00001d025667_P001 | Maize | cytosol | 15.53 | 18.65 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400022426 | EnsemblPlantsGene:PGSC0003DMG400008693 | EntrezGene:102582313 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | PGSC:PGSC0003DMG400008693 | RefSeq:XP_006352567.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000296A6E4 | UniProt:M1AGP8 | MapMan:20.4.2.1.2 | : | : |
Description
WPP domain-interacting protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400008693]
Coordinates
chr10:+:788234..792815
Molecular Weight (calculated)
64493.9 Da
IEP (calculated)
4.842
GRAVY (calculated)
-0.684
Length
586 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTLQDLDD PDRNKVESNG SSVINNNAPI LDESKGKGIE TADPVGSPPS VKSSPTAKGF GLKKWRRIRR EAHKDEDSNT DSAKLLKRGL SSSAANSAKP
101: VHLSAGTIRN SDGSVSSVNA LLSIPDVLVD GFGLIGNSGL AIQPIFFGGT DSDNSEDRSS RSSSAASVPK SRYEAPIFHG YVPVKNGQRT LSGKMGTSAQ
201: QSHRGKGQAE TSKKPRGERV KIEKENSHSS MESDSQSSNF LPTQSNNHAT SNGTKGGSSV NNDGQFSDEV LTRERPFSEE LQTALDRRNG KECETQEDLG
301: AESTWEVKEE RSEYQGLSTD HDPLLESIFT LQAAQENLER EIQKWKEIRI EDDIIDHSVQ DVGIISDFSS GDTDFPGPDT SEQSQPSNGM QHSFNSLESE
401: VVSLKQNVIL LQNKLNDEAD LIKLKEARVA ELEAILSSNA EKEEKKTGND LHQSSGDIEK ELEGLFRQKI EAELEYLVIS RTIQKWRAAA VDQVTLMEEQ
501: KILATEQAQM VKKLEDSETK VAMHKSQVET LYNYCDNVAS TNKTLELRKG VRKYCSYFLI QLVLLVIVFG LYMLQMSSDA VEVVPT
101: VHLSAGTIRN SDGSVSSVNA LLSIPDVLVD GFGLIGNSGL AIQPIFFGGT DSDNSEDRSS RSSSAASVPK SRYEAPIFHG YVPVKNGQRT LSGKMGTSAQ
201: QSHRGKGQAE TSKKPRGERV KIEKENSHSS MESDSQSSNF LPTQSNNHAT SNGTKGGSSV NNDGQFSDEV LTRERPFSEE LQTALDRRNG KECETQEDLG
301: AESTWEVKEE RSEYQGLSTD HDPLLESIFT LQAAQENLER EIQKWKEIRI EDDIIDHSVQ DVGIISDFSS GDTDFPGPDT SEQSQPSNGM QHSFNSLESE
401: VVSLKQNVIL LQNKLNDEAD LIKLKEARVA ELEAILSSNA EKEEKKTGND LHQSSGDIEK ELEGLFRQKI EAELEYLVIS RTIQKWRAAA VDQVTLMEEQ
501: KILATEQAQM VKKLEDSETK VAMHKSQVET LYNYCDNVAS TNKTLELRKG VRKYCSYFLI QLVLLVIVFG LYMLQMSSDA VEVVPT
001: MDLESESSAL ESVDDNVLIQ QSASNVCDDG RSLDNGSCSD ESVKLLSTSN SVELGKPMSF DSPGDGGGAY SPVLKGQGLR KWRRIRRDLV KDTSANMENS
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
Arabidopsis Description
WIP1WPP domain-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.