Factsheet for PGSC0003DMT400024446

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 8
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03120.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT2G03120.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT2G03120.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g064790.1.1	Tomato	plasma membrane	97.92	97.05
PGSC0003DMT400058489	Potato	plasma membrane	90.18	89.64
VIT_06s0009g03520.t01	Wine grape	plasma membrane	87.2	85.92
KRH62014	Soybean	endoplasmic reticulum	86.31	85.04
KRH52673	Soybean	plasma membrane	86.31	85.04
KRH16232	Soybean	plasma membrane	85.71	84.46
CDY03017	Canola	plasma membrane	80.36	80.6
Bra024788.1-P	Field mustard	plasma membrane	80.06	80.3
CDY45179	Canola	plasma membrane	80.06	80.3
CDX88296	Canola	plasma membrane	70.54	80.07
TraesCS6B01G064500.2	Wheat	plasma membrane	80.95	79.77
AT2G03120.1	Thale cress	plasma membrane	81.55	79.65
CDY60831	Canola	plasma membrane	79.46	79.46
Os05t0436400-03	Rice	plasma membrane	67.56	79.37
TraesCS6B01G064600.2	Wheat	plasma membrane	80.36	79.18
CDY17419	Canola	plasma membrane	79.17	79.17
Os02t0117400-01	Rice	plasma membrane	80.65	79.01
TraesCSU01G107100.2	Wheat	plasma membrane	80.36	78.95
EES04366	Sorghum	golgi, plasma membrane	80.65	78.78
HORVU6Hr1G009670.1	Barley	plasma membrane	79.76	78.36
CDY09342	Canola	plasma membrane	79.76	78.13
CDY64408	Canola	plasma membrane	79.76	78.13
Bra026567.1-P	Field mustard	plasma membrane	79.76	78.13
Zm00001d015006_P004	Maize	plasma membrane	80.65	78.1
TraesCS6A01G048100.2	Wheat	plasma membrane	79.46	78.07
TraesCS3D01G492200.1	Wheat	plasma membrane	79.76	77.91
TraesCS3B01G545500.1	Wheat	plasma membrane	79.46	77.62
KXG37644	Sorghum	plasma membrane	79.76	75.92
HORVU3Hr1G108010.6	Barley	plasma membrane	77.38	75.14
CDY03016	Canola	extracellular, golgi, plasma membrane	28.57	73.28
GSMUA_Achr4P16430_001	Banana	extracellular, plasma membrane, vacuole	27.08	65.0
Zm00001d015005_P002	Maize	plasma membrane	40.77	57.56
Zm00001d054017_P003	Maize	plasma membrane	81.25	50.28
OQU87114	Sorghum	plasma membrane	38.69	36.11
PGSC0003DMT400040816	Potato	plasma membrane	27.98	26.4
PGSC0003DMT400031075	Potato	cytosol, peroxisome, plasma membrane	22.62	25.25
PGSC0003DMT400032136	Potato	plasma membrane	26.49	16.36
PGSC0003DMT400011660	Potato	plasma membrane	23.81	15.04

Protein Annotations

MapMan:18.10.1.4	MEROPS:A22.A15	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	UniProt:M1AK48	PFAM:PF04258	EnsemblPlantsGene:PGSC0003DMG400009454	PGSC:PGSC0003DMG400009454	EnsemblPlants:PGSC0003DMT400024446
PANTHER:PTHR12174	PANTHER:PTHR12174:SF23	InterPro:Peptidase_A22B_SPP	InterPro:Preselin/SPP	SMART:SM00730	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI000295E39C	SEG:seg	:	:	:

Description

Minor histocompatibility antigen H13 [Source:PGSC_GENE;Acc:PGSC0003DMG400009454]

Coordinates

chr11:-:35609799..35615827

Molecular Weight (calculated)

37239.2 Da

IEP (calculated)

8.041

GRAVY (calculated)

0.641

Length

336 amino acids

Sequence
(BLAST)

001: MERIANVALL GLSLAPLVVN VDPNVNVIVT ACLTVFVGCC RSVKPTPPSE TMSNEHAMRF PLVGSAMLLS LFLLFKFLSK DLVNAVLTCY FFVLGIAALS
101: ATLLPAIKRF LPNKWNDDLI IWHFPYFRSL EIEFTRSQIV AAIPGTIFCV WYAKQKHWLA NNVLGLAFCI QGIEMLSLGS FKTGAILLAG LFVYDIFWVF
201: FTPVMVSVAK SFDAPIKLLF PTADAKRPFS MLGLGDIVIP GIFVALALRF DVSRGKEPQY FKSAFLGYTF GLALTIFVMN WFQAAQPALL YIVPAVIGFL
301: AVHCIWNGDV KPLLEFDEGK TKDAEEAEAK ESKKVE

Best Arabidopsis Sequence Match ( AT2G03120.1 )
(BLAST)

001: MKNCERFANL ALAGLTLAPL VVRVNPNLNV ILTACITVYV GCFRSVKDTP PTETMSKEHA MRFPLVGSAM LLSLFLLFKF LSKDLVNAVL TAYFFVLGIV
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE

Arabidopsis Description

SPPSignal peptide peptidase [Source:UniProtKB/Swiss-Prot;Acc:O81062]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.