Factsheet for PGSC0003DMT400011660

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	golgi, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098670.1.1	Tomato	plasma membrane	96.62	96.62
PGSC0003DMT400031075	Potato	cytosol, peroxisome, plasma membrane	40.6	71.76
GSMUA_Achr8P16510_001	Banana	plasma membrane	45.11	60.91
VIT_05s0062g01250.t01	Wine grape	plasma membrane	59.59	59.47
KRH46863	Soybean	endoplasmic reticulum	59.21	59.43
KRH01823	Soybean	plasma membrane	58.83	59.06
KRG93116	Soybean	plasma membrane	56.39	58.37
CDY53660	Canola	plasma membrane	30.08	57.97
KRH36351	Soybean	plasma membrane	56.39	57.69
Os11t0433200-02	Rice	cytosol, plasma membrane	48.31	56.48
OQU81829	Sorghum	plasma membrane	54.51	54.31
TraesCS7D01G002900.1	Wheat	plasma membrane	34.77	54.25
TraesCS7D01G003100.1	Wheat	plasma membrane	54.32	54.02
TraesCS7A01G003000.1	Wheat	plasma membrane	54.32	54.02
TraesCS4A01G495600.2	Wheat	plasma membrane	54.51	53.8
Bra030626.1-P	Field mustard	plasma membrane	54.51	53.6
CDX86551	Canola	plasma membrane	54.32	53.42
AT1G05820.1	Thale cress	plasma membrane	53.76	53.36
CDY63797	Canola	plasma membrane	54.14	53.23
CDY53658	Canola	plasma membrane	52.44	51.57
Bra004741.1-P	Field mustard	plasma membrane	52.44	51.57
HORVU7Hr1G000380.6	Barley	plasma membrane	51.5	51.22
GSMUA_Achr11P...	Banana	plasma membrane	39.66	51.21
TraesCS4A01G495400.1	Wheat	peroxisome, plasma membrane, vacuole	32.89	50.72
AT2G43070.4	Thale cress	plasma membrane	53.57	47.11
GSMUA_AchrUn_...	Banana	plasma membrane	36.84	47.0
CDY30380	Canola	plasma membrane, plastid	41.92	46.46
Bra037737.1-P	Field mustard	plastid	33.65	44.42
TraesCS7A01G003200.1	Wheat	plasma membrane	40.23	44.31
PGSC0003DMT400032136	Potato	plasma membrane	41.92	40.99
CDY56345	Canola	plasma membrane	33.65	40.04
CDY55505	Canola	plasma membrane	52.26	35.15
Zm00001d004702_P006	Maize	plasma membrane	49.62	34.55
PGSC0003DMT400024446	Potato	plasma membrane	15.04	23.81
PGSC0003DMT400058489	Potato	plasma membrane	15.04	23.67
PGSC0003DMT400040816	Potato	plasma membrane	13.72	20.51

Protein Annotations

EntrezGene:102602064	MapMan:18.10.1.4	Gene3D:3.50.30.30	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190
GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	UniProt:M0ZZY0	InterPro:PA_domain	PFAM:PF02225	PFAM:PF04258
EnsemblPlantsGene:PGSC0003DMG400004582	PGSC:PGSC0003DMG400004582	EnsemblPlants:PGSC0003DMT400011660	PANTHER:PTHR12174	PANTHER:PTHR12174:SF44	InterPro:Peptidase_A22B_SPP
InterPro:Preselin/SPP	SMART:SM00730	SUPFAM:SSF52025	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000294C1CC
RefSeq:XP_006349892.1	SEG:seg	:	:	:	:

Description

Minor histocompatibility antigen H13 [Source:PGSC_GENE;Acc:PGSC0003DMG400004582]

Coordinates

chr12:+:59495645..59504247

Molecular Weight (calculated)

57878.1 Da

IEP (calculated)

5.799

GRAVY (calculated)

0.511

Length

532 amino acids

Sequence
(BLAST)

001: MAFSRRLIGV SILSCLLLLS STATGDDDIS RAAPANASRS CNNPYRMVLV KLWIDGAEHE SIGGLSAAFG SLLSTDTKNS PRLPATYTKP LNGCSSSSFK
101: LTGSIALALR GQCDFLTKAM VAQAGGAAGI VLINDQEDLV EMACPNNSTV SNVTIPVVTI SKAGGDVIDK YISAGKKVEI MLYSPDRPIV DYSAMFIWMM
201: AVGTIFCASF WSEFTTSKEN DFNEQSPEVI AGGSREEDDK EILNITTKSA FVFVITASTF LLLLYFFMSS WFVWLLIILF AIGGVEGMHS CIISLVSSKC
301: KGCGRKKLNL PLLGEISVLS LVVLILCVAF AISWAATRKA SYSWIGQDIL GICLMITVLQ LAQLPNIKVA TVLLCCAFLY DIFWVFLSPA IFHDSVMIAV
401: ARGDKAGGES IPMLLRIPRV SDPYGGYDMI GFGDILFPGL LVCFAFRFDK ARKKNVLNGY YIWMIVGYGI GLLFTFLGMY LMNGHGQPAL LYLVPCTLGV
501: YVLLGLLRGE LKDLWNYDSE STRVADSLLE DA

Best Arabidopsis Sequence Match ( AT1G05820.1 )
(BLAST)

001: MSLPPFTCRL LAAAAALYLI GLLCVGADTK DVTAPKIPGC SNEFQMVKVE NWVNGENGET FTAMTAQFGT MLPSDKDKAV KLPVALTTPL DSCSNLTSKL
101: SWSIALSVRG ECAFTVKAQV AQAGGAAALV LINDKEELDE MVCGEKDTSL NVSIPILMIT TSSGDALKKS IMQNKKVELL LYAPKSPIVD YAVVFLWLMS
201: VGTVFVASVW SHVTSPKKND EQYDELSPKK SSNVDATKGG AEEETLDISA MGAVIFVISA STFLVLLFFF MSSWFILILT IFFVIGGMQG MHNINVTLIT
301: RRCSKCGQKN LKLPLLGNTS ILSLVVLLFC FVVAILWFMN RKTSHAWAGQ DIFGICMMIN VLQVARLPNI RVATILLCCA FFYDIFWVFI SPLIFKQSVM
401: IAVARGSKDT GESIPMLLRI PRLSDPWGGY NMIGFGDILF PGLLICFIFR FDKENNKGVS NGYFPWLMFG YGLGLFLTYL GLYVMNGHGQ PALLYLVPCT
501: LGITVILGLV RKELRDLWNY GTQQPSAADV NPSPEA

Arabidopsis Description

SPPL5Signal peptide peptidase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA44]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.