CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53660	Canola	plasma membrane	45.66	89.49
AT2G43070.4	Thale cress	plasma membrane	90.94	81.32
CDY30380	Canola	plasma membrane, plastid	68.76	77.5
CDY56345	Canola	plasma membrane	58.23	70.47
CDY55505	Canola	plasma membrane	98.34	67.26
Solyc09g098200.2.1	Tomato	plasma membrane	30.13	61.51
GSMUA_Achr8P16510_001	Banana	plasma membrane	44.55	61.17
VIT_05s0062g01250.t01	Wine grape	plasma membrane	59.52	60.41
KRH46863	Soybean	endoplasmic reticulum	58.41	59.62
KRH01823	Soybean	plasma membrane	58.04	59.25
CDX86551	Canola	plasma membrane	59.15	59.15
PGSC0003DMT400031075	Potato	cytosol, peroxisome, plasma membrane	32.72	58.8
CDY63797	Canola	plasma membrane	58.78	58.78
KRG93116	Soybean	plasma membrane	55.45	58.37
Os11t0433200-02	Rice	cytosol, plasma membrane	48.43	57.58
KRH36351	Soybean	plasma membrane	55.08	57.31
OQU81829	Sorghum	plasma membrane	55.82	56.55
TraesCS7D01G002900.1	Wheat	plasma membrane	35.49	56.3
TraesCS7A01G003000.1	Wheat	plasma membrane	54.9	55.51
TraesCS7D01G003100.1	Wheat	plasma membrane	54.71	55.33
TraesCS4A01G495600.2	Wheat	plasma membrane	54.16	54.36
TraesCS4A01G495400.1	Wheat	peroxisome, plasma membrane, vacuole	33.64	52.75
Solyc12g098670.1.1	Tomato	plasma membrane	51.76	52.63
PGSC0003DMT400011660	Potato	plasma membrane	51.57	52.44
HORVU7Hr1G000380.6	Barley	plasma membrane	51.2	51.78
GSMUA_Achr11P...	Banana	plasma membrane	37.89	49.76
TraesCS7A01G003200.1	Wheat	plasma membrane	42.51	47.62
GSMUA_AchrUn_...	Banana	plasma membrane	35.86	46.52
CDY38021	Canola	plasma membrane	45.66	45.74
CDY15163	Canola	plasma membrane	44.92	45.0
CDX90049	Canola	plasma membrane	44.92	45.0
CDY45351	Canola	plasma membrane	44.55	44.71
CDY08318	Canola	plasma membrane	44.18	44.34
Zm00001d004702_P006	Maize	plasma membrane	51.94	36.78
CDY03016	Canola	extracellular, golgi, plasma membrane	6.84	28.24
CDX67547	Canola	plasma membrane	8.87	27.43
CDY60831	Canola	plasma membrane	15.9	25.6
CDY17419	Canola	plasma membrane	15.9	25.6
CDX72401	Canola	endoplasmic reticulum, plasma membrane	17.38	25.47
CDX75349	Canola	plasma membrane	17.38	25.27
CDY71437	Canola	plasma membrane	17.19	25.2
CDY46118	Canola	endoplasmic reticulum, plasma membrane	17.19	25.2
CDY45179	Canola	plasma membrane	15.53	25.07
CDY03017	Canola	plasma membrane	15.53	25.07
CDX88296	Canola	plasma membrane	13.68	25.0
CDY64408	Canola	plasma membrane	15.53	24.49
CDY09342	Canola	plasma membrane	15.53	24.49
CDX68973	Canola	endoplasmic reticulum, plasma membrane	16.82	24.46
CDY29483	Canola	cytosol	3.14	10.49

Protein Annotations

MapMan:18.10.1.4	Gene3D:3.50.30.30	GO:A0A078IXB5	UniProt:A0A078IXB5	MEROPS:A22.A06	EnsemblPlants:CDY53658
ProteinID:CDY53658	ProteinID:CDY53658.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00011142001	InterPro:PA_domain	PFAM:PF02225	PFAM:PF04258	PANTHER:PTHR12174
PANTHER:PTHR12174:SF58	InterPro:Peptidase_A22B_SPP	InterPro:Preselin/SPP	SMART:SM00730	SUPFAM:SSF52025	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0004EDC68E	SEG:seg	:	:	:

Description

BnaC04g52920DBnaC04g52920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXB5]

Coordinates

chrLK033224:-:52907..56712

Molecular Weight (calculated)

59337.5 Da

IEP (calculated)

4.742

GRAVY (calculated)

0.457

Length

541 amino acids

Sequence
(BLAST)

001: MPSSDPPRHR CPTALLFLLL LGFSFAAADD ASWTEDSTLE SPGCTNKFQM VKILNWVDGV ESDDFFTGLT AQFGAALPSD ADQGVRSPVA FVRPLDSCSN
101: LSSRLDGSIA LSIRGSCAFT EKAKHAEAAG ASALLVINDK EDLDEMGCME KDTSLNVSIP VLMISKSSGD ALNKSMVDNK SVELLLYAPT RPAVDLTAGL
201: LLLMAVGTVV VASLWSDLTD PDQANESYSI LAKEFSGAGT RKDDPEKEIL DISVTGAVFF IVTASIFLLL LFYFMSSWFV WVLTIFFCIG GMQGMHNIIT
301: AVLLRKWRHL GRRSVKLPLL GTMSWMSLLV NIFCLAFAVF WFVKRHTSYA WAGQDILGIC LMITALQVVR LPNIKVATVL LCCAFVYDIF WVFISPLIFH
401: ESVMIVVAQG DSSSGESIPM LLRIPRFFDP WGGYDMIGFG DILFPGLLIS FASRYDKIKK RVISSGYFLW LTIGYGVGLL LTYLGLYLMD GHGQPALLYI
501: VPCTLGLAVI LGLVRGELKE LWNYGIEESE SNTPEDTLPV A

Best Arabidopsis Sequence Match ( AT2G43070.3 )
(BLAST)

001: MNHSKIGTIE TVKELLNLED KKDYNIDRPI YPRKILTATL CLFFFFFFFF SPICSVDCVM SSFDPPNHRY SALVLILLLL GFSVAAADDV SWTEDSSLES
101: PGCTNKFQMV KVLNWVDGVE GDFLTGLTAQ FGAALPSVPD QALRFPAAFV DPLDSCSHLS SRLDGHIALS IRGNCAFTEK AKHAEAAGAS ALLVINDKED
201: LDEMGCMEKD TSLNVSIPVL MISKSSGDAL NKSMVDNKNV ELLLYAPKRP AVDLTAGLLL LMAVGTVVVA SLWSELTDPD QANESYSILA KDVSSAGTRK
301: DDPEKEILDI SVTGAVFFIV TASIFLLLLF YFMSSWFVWV LTIFFCIGGM QGMHNIIMAV ILRKCRHLAR KSVKLPLLGT MSVLSLLVNI VCLAFAVFWF
401: IKRHTSYSWV GQDILGICLM ITALQVVRLP NIKVATVLLC CAFVYDIFWV FISPLIFHES VMIVVAQGDS STGESIPMLL RIPRFFDPWG GYDMIGFGDI
501: LFPGLLISFA SRYDKIKKRV ISNGYFLWLT IGYGIGLLLT YLGLYLMDGH GQPALLYIVP CTLGLAVILG LVRGELKELW NYGIEESESH TPEDPMPVA

Arabidopsis Description

SPPL3SIGNAL PEPTIDE PEPTIDASE-LIKE 3 [Source:TAIR;Acc:AT2G43070]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.