CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX78905
CDX89063
CDX97739
CDX98596
CDX99411
CDY01565
CDY30157
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03120.1	CDX97739	AT3G16310.1	21798944
AT2G03120.1	CDY30157	AT3G16310.1	21798944
AT2G03120.1	CDX67837	AT3G60600.1	21798944
AT2G03120.1	CDX71796	AT3G60600.1	21798944
AT2G03120.1	CDX89063	AT3G60600.1	21798944
AT2G03120.1	CDY41153	AT3G60600.1	21798944
AT2G03120.1	CDY48365	AT3G60600.1	21798944
AT2G03120.1	CDX78905	AT4G19030.1	21798944
AT2G03120.1	CDX98596	AT4G19030.1	21798944
AT2G03120.1	CDX99411	AT4G19030.1	21798944
AT2G03120.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60831	Canola	plasma membrane	97.64	86.01
CDY17419	Canola	plasma membrane	97.3	85.71
CDY45179	Canola	plasma membrane	95.95	84.78
CDY03017	Canola	plasma membrane	95.61	84.48
CDY64408	Canola	plasma membrane	95.95	82.8
CDY09342	Canola	plasma membrane	95.95	82.8
AT2G03120.1	Thale cress	plasma membrane	92.91	79.94
KRH62014	Soybean	endoplasmic reticulum	85.47	74.19
KRH52673	Soybean	plasma membrane	85.47	74.19
KRH16232	Soybean	plasma membrane	82.43	71.55
EES04366	Sorghum	golgi, plasma membrane	82.77	71.22
TraesCS6B01G064500.2	Wheat	plasma membrane	81.76	70.97
VIT_06s0009g03520.t01	Wine grape	plasma membrane	81.76	70.97
Os02t0117400-01	Rice	plasma membrane	81.76	70.55
PGSC0003DMT400024446	Potato	plasma membrane	80.07	70.54
Solyc01g008820.2.1	Tomato	plasma membrane	80.41	70.41
TraesCS6B01G064600.2	Wheat	plasma membrane	81.08	70.38
PGSC0003DMT400058489	Potato	plasma membrane	80.07	70.12
TraesCS3B01G545500.1	Wheat	plasma membrane	81.42	70.06
Zm00001d015006_P004	Maize	plasma membrane	82.09	70.03
Solyc11g064790.1.1	Tomato	plasma membrane	80.07	69.91
TraesCS3D01G492200.1	Wheat	plasma membrane	81.08	69.77
TraesCSU01G107100.2	Wheat	plasma membrane	80.41	69.59
HORVU6Hr1G009670.1	Barley	plasma membrane	80.41	69.59
Os05t0436400-03	Rice	plasma membrane	66.89	69.23
HORVU3Hr1G108010.6	Barley	plasma membrane	80.74	69.08
TraesCS6A01G048100.2	Wheat	plasma membrane	79.39	68.71
KXG37644	Sorghum	plasma membrane	81.42	68.27
GSMUA_Achr4P16430_001	Banana	extracellular, plasma membrane, vacuole	30.41	64.29
Zm00001d015005_P002	Maize	plasma membrane	46.62	57.98
CDY03016	Canola	extracellular, golgi, plasma membrane	25.0	56.49
Zm00001d054017_P003	Maize	plasma membrane	82.43	44.94
OQU87114	Sorghum	plasma membrane	39.19	32.22
CDX67547	Canola	plasma membrane	14.53	24.57
CDX72401	Canola	endoplasmic reticulum, plasma membrane	30.07	24.12
CDY46118	Canola	endoplasmic reticulum, plasma membrane	30.07	24.12
CDY71437	Canola	plasma membrane	30.07	24.12
CDX68973	Canola	endoplasmic reticulum, plasma membrane	28.72	22.85
CDX75349	Canola	plasma membrane	28.72	22.85
CDY53660	Canola	plasma membrane	17.57	18.84
CDY29483	Canola	cytosol	7.77	14.2
CDY53658	Canola	plasma membrane	25.0	13.68
CDY30380	Canola	plasma membrane, plastid	21.96	13.54
CDY38021	Canola	plasma membrane	23.99	13.15
CDY15163	Canola	plasma membrane	23.99	13.15
CDX90049	Canola	plasma membrane	23.99	13.15
CDY63797	Canola	plasma membrane	23.65	12.94
CDY08318	Canola	plasma membrane	23.31	12.8
CDX86551	Canola	plasma membrane	23.31	12.75
CDY45351	Canola	plasma membrane	22.97	12.62
CDY56345	Canola	plasma membrane	15.88	10.51
CDY55505	Canola	plasma membrane	24.66	9.23

Protein Annotations

MapMan:18.10.1.4	GO:A0A078DG91	MEROPS:A22.A15	EnsemblPlants:CDX88296	ProteinID:CDX88296	ProteinID:CDX88296.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00147798001	PFAM:PF04258	PFscan:PS51257	PANTHER:PTHR12174	PANTHER:PTHR12174:SF23
InterPro:Peptidase_A22B_SPP	InterPro:Preselin/SPP	SMART:SM00730	TMHMM:TMhelix	UniParc:UPI0004EEC7ED	SEG:seg

Description

BnaC06g37400D

Coordinates

chrLK031855:-:197598..199383

Molecular Weight (calculated)

32841.9 Da

IEP (calculated)

9.658

GRAVY (calculated)

0.766

Length

296 amino acids

Sequence
(BLAST)

001: MKNCERIANL ALAGLTVAPL VVNVNPNLNV VLTACLTVYV GCFRSVKDSP PTETMSKEHA MRFPLVGSAM LLSLFLLFKF LSKDLVNAVL TAYFFVLGIV
101: ALSATLLPAI SRFLPKPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LVGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSKRSQ PKYFTSAFVG YVVGVVLTIV VMNWFQAAQV SFSYVS

Best Arabidopsis Sequence Match ( AT2G03120.1 )
(BLAST)

001: MKNCERFANL ALAGLTLAPL VVRVNPNLNV ILTACITVYV GCFRSVKDTP PTETMSKEHA MRFPLVGSAM LLSLFLLFKF LSKDLVNAVL TAYFFVLGIV
101: ALSATLLPAI RRFLPNPWND NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS LGSFKTGAIL LAGLFFYDIF
201: WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI
301: GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE

Arabidopsis Description

SPPSignal peptide peptidase [Source:UniProtKB/Swiss-Prot;Acc:O81062]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.